RNA id: TU56961


Basic Information

Item Value
RNA id TU56961
length 617
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G38507
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21696328 ~ 21697193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gCCTTAACAAATAagagacatatttaaaaaaaaaactactgataCCACTACAGATACCACTGATATCAGATTCATCGCTTCTGGCCATTTCCAAAGGAAATACTTAATGATCAGAAATCACAGTATTGAGATGTATAGAGATGTATAGAATATCAAAGCAAAGCCTCTATGATCCTCACCTTTCCAGGTTTGCCCTCACACGCATAAAGGTTTGCAAGGAGGCCGAAGTCGCAGTCATGGAACCTGTCACTGTATTTCTCCTGCAGACATTTTCCATCTGCTGGGTTGATGGATGAAAAATAACTGGCATTCACTGCAGGTCTTCCTTCAGCTTCAGTCAGCACCAGAGGCATCAACTATGCCATTCCCCCGACTGTCTTGCAGGAAACGGCACCAGCACCAAGAAAAAATCCCCCCGGCAGCTCCACCTCCTTGGACACCGCGTTCATGTTGTACACCTTAAAGGGGAAAACTTGCATCGGTCAGGGTTTATGATGCCTTTATGACAGTACCATTTTCAGTCTTTTAATGCACCTTCTCCGGTTTGGCCAGAGGAATCAGATAGGGTACGCCTCCCACATCAGTAATACGAGGTTTGCCGCACAGACCTAATACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56726 lncRNA downstream 282059 21410985 ~ 21414269 (-) True G38347
TU56717 lncRNA downstream 317146 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA downstream 317146 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA downstream 334205 21361011 ~ 21362123 (-) True LOC122345899
TU56700 lncRNA downstream 544485 21149938 ~ 21151843 (-) True G38334
TU56970 lncRNA upstream 124283 21821476 ~ 21829707 (-) False G38510
TU56971 lncRNA upstream 124283 21821476 ~ 21829707 (-) False G38510
TU56968 lncRNA upstream 130130 21827323 ~ 21829707 (-) True G38510
TU56967 lncRNA upstream 130422 21827615 ~ 21829707 (-) False G38510
TU56969 lncRNA upstream 130422 21827615 ~ 21829707 (-) False G38510
XM_043239117.1 mRNA downstream 1161 21686200 ~ 21695167 (-) True pho
XM_043239118.1 mRNA downstream 10661 21678239 ~ 21685667 (-) True aspa
XM_043240482.1 mRNA downstream 23432 21424370 ~ 21672896 (-) True LOC122345940
XM_043240487.1 mRNA downstream 206138 21424370 ~ 21490190 (-) False LOC122345940
XM_043240483.1 mRNA downstream 218371 21424370 ~ 21477957 (-) False LOC122345940
XM_043238169.1 mRNA upstream 7008 21704201 ~ 21808104 (-) True LOC122344645
XM_043240340.1 mRNA upstream 111820 21809013 ~ 21826105 (-) False akap10
XM_043240339.1 mRNA upstream 111820 21809013 ~ 21826105 (-) True akap10
XM_043238742.1 mRNA upstream 130413 21827606 ~ 21829682 (-) False selenow1
XM_043238741.1 mRNA upstream 130413 21827606 ~ 21829682 (-) True selenow1
TU56743 other downstream 76745 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 327280 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 760235 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1568938 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1640530 20051659 ~ 20055798 (-) True G38058
XR_006251046.1 other upstream 111820 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 180963 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 180963 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 262592 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 342708 22039901 ~ 22040034 (-) True LOC122346224

Expression Profile