RNA id: TU56970



Basic Information


Item Value
RNA id TU56970
length 807
lncRNA type read_through
GC content 0.42
exon number 7
gene id G38510
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21821476 ~ 21829732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATGCGCCATTCGCTCCGCCTCAAATCTTTCATAACAATCCAGGAAACAGCGTTAAAATATTTCCCAGAACCGAAAGTAATTGGATCAGTTCCGCGTCTACACTCACCACAGCACAATCAGCCCTTGATTCAGTCAAGAACCGCAGCGACTGCCAGCATGACCGTCAAAGTTCATATCGTTTACTGTGGTGGATGAGGGTACAGGCCCAAGTTCATCAAACTCAAGACACAGCTTGAGGATGAATTCCCAGGCGAACTTGAAATAACCGGCGAGGGCACACCCTCAACCACAGGCTGGTTTGAGGTGGAGGTAAACAAGACGTTGGTGCACTCAAAAAAGAATGGAGATGGATTTGTTGACtcaaatttaaaattcaaaacagtCGTGACTGCCATCGAGCAGGCCATGGGGAAATGAACATGAACTGATCATAGAGTTATTCTTCTCTGTTTGTTGGACTCCTGGGCAGGGCAACAATGACGGTGACGTCCAAAGTGTTTTTAGCACGGATGCTACTCGATGCTCTCTCCGCTCTACCTGGGAGAAGACACTCAGAGCTAGAAACTACCTATGAATACTGCTTCATATAAATGCTTTAACGGGTGAAAATAATAAGGGATAATAAAAAGGGAAATGATAACATTAGACAGAATTCGGAAAGAGCATGTCAAGTtgaggtacttttttttttccatttctgtttGCCTCTGTTACAACGCACAACTATTTTGGCATTGTTCAAGATTCTCATGCAATTAAAGATGTTAATGATTAAaaaaaaaaaaaaaaaaaaaaaaaaaaaatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56961 lncRNA downstream 124283 21696328 ~ 21697193 (-) True G38507
TU56726 lncRNA downstream 407207 21410985 ~ 21414269 (-) True G38347
TU56717 lncRNA downstream 442294 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA downstream 442294 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA downstream 459353 21361011 ~ 21362123 (-) True LOC122345899
XR_006250963.1 lncRNA upstream 6606 21836313 ~ 21840100 (-) True LOC122345027
XR_006250964.1 lncRNA upstream 6606 21836313 ~ 21837605 (-) False LOC122345027
TU56981 lncRNA upstream 9652 21839359 ~ 21839673 (-) True G38515
TU56990 lncRNA upstream 37421 21867128 ~ 21867461 (-) True G38521
TU56992 lncRNA upstream 37908 21867615 ~ 21876585 (-) True G38523
XM_043238169.1 mRNA downstream 13372 21704201 ~ 21808104 (-) True LOC122344645
XM_043239117.1 mRNA downstream 126309 21686200 ~ 21695167 (-) True pho
XM_043239118.1 mRNA downstream 135809 21678239 ~ 21685667 (-) True aspa
XM_043240484.1 mRNA downstream 347397 21424370 ~ 21474079 (-) False LOC122345940
XM_043238736.1 mRNA upstream 2 21829709 ~ 21834433 (-) True ehd2a
XM_043238735.1 mRNA upstream 2 21829709 ~ 21834426 (-) False ehd2a
XM_043238734.1 mRNA upstream 2 21829709 ~ 21834322 (-) False ehd2a
XM_043238729.1 mRNA upstream 12604 21842311 ~ 21849084 (-) True si:dkeyp-117b8.4
XM_043238730.1 mRNA upstream 12604 21842311 ~ 21847882 (-) False si:dkeyp-117b8.4
TU56743 other downstream 201893 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 452428 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 885383 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1694086 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1765678 20051659 ~ 20055798 (-) True G38058
XR_006250934.1 other upstream 48449 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 48449 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 130078 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 210194 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1772537 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile