RNA id: TU56992


Basic Information

Item Value
RNA id TU56992
length 587
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G38523
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21867615 ~ 21876585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTCTGCAGTCCATGCACATTCTTTTATCGAAGAGGAGacataaatttatatttcaaatccTTTATTGgacagatgcatatgatacaaacatcagctgctgagttcattcacacaGGAAAAAGTGCGCTCACACTccagcagttctcaatatttatcgtcgtctctcttcagttcacaccccctcgtgttatctgactccattgcCTCCTTCGGTGTTGTTTCCTCTTTGCAGGAAAGCTGACCTCTTCATTCCATCTGTGACTTATAGAACATGAAGAAAGACATACATGACCCCTGACCTCTCAACTCTCAAGCATGCAGCTTGCTTATCACTCCTCTGCACGCAGACATAAGCCAGGGACGTTAGCTGACAGTTTCCTGTTGAACTAACAttcttttgcacaatatattgctttCACAAACACCATGTCgcttaaaagatatatttgctactttgtatttaaatgccaTATCTGATTATAATGCTCATAATAAACTGtgaattaatgcaaaacatttgtataattgtaaaaaataaaacatcattaataataattcataaatgatAGAAAATATCCCACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56990 lncRNA downstream 154 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 27515 21836313 ~ 21840100 (-) True LOC122345027
TU56981 lncRNA downstream 27942 21839359 ~ 21839673 (-) True G38515
XR_006250964.1 lncRNA downstream 30010 21836313 ~ 21837605 (-) False LOC122345027
TU56972 lncRNA downstream 37883 21827615 ~ 21829732 (-) False G38510
TU57036 lncRNA upstream 132301 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 161775 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 161775 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 161795 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 161795 22038380 ~ 22041219 (-) False LOC122344815
XM_043240559.1 mRNA downstream 576 21856983 ~ 21867039 (-) False sympk
XM_043240555.1 mRNA downstream 576 21856983 ~ 21867039 (-) False sympk
XM_043240556.1 mRNA downstream 576 21856983 ~ 21867039 (-) True sympk
XM_043240558.1 mRNA downstream 768 21856983 ~ 21866847 (-) False sympk
XM_043238738.1 mRNA downstream 11072 21852579 ~ 21856543 (-) False rsph4a
XM_043238398.1 mRNA upstream 496 21877081 ~ 21884022 (-) True LOC122344823
XM_043238785.1 mRNA upstream 9422 21886007 ~ 21896079 (-) True hnrnpul1l
XM_043238786.1 mRNA upstream 9422 21886007 ~ 21896028 (-) False hnrnpul1l
XM_043238440.1 mRNA upstream 33189 21909774 ~ 21922073 (-) True LOC122344852
XM_043239243.1 mRNA upstream 48913 21925498 ~ 21953026 (-) False ap2b1
XR_006251046.1 other downstream 41510 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 248032 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 498567 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 931522 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1740225 20125589 ~ 20127390 (-) True G38140
XR_006250934.1 other upstream 1571 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 1571 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 83200 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 163316 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1725659 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile