RNA id: TU57040



Basic Information


Item Value
RNA id TU57040
length 470
lncRNA type inter_gene
GC content 0.48
exon number 8
gene id LOC122344815
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22038360 ~ 22041267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCAGCTTCAACGCGTCTGCGAGTGTTAGTCAAGAAGGCTGGCTTAAACCTAGGATTTTGGGCATATCCATGTTGTTTGAAGTGCGTAGTCACCAACATGTGCGGAATGGTTTCGGGTGACATTAATGATCCTCCCGTGAACGAACTGGGCAATCGGGCTCCAGAACACAATGTGGGTGGATAATCCTGCGAGTTGATGCATAACCTGCCCCTGCAGTAGCTTGTTCTAATgGTGATGTGAAGGATGTCCACTAGAGGGCGCAACACCCTTTTGGTGTTTAGAAGTGTTGGAGGTCCCATATGACTAGACTGAAGAATGAATGCTGGCAGCTGATTGCTCTGACAGTACTGAGACGAAAAGTTACAGGTACGGTGTTGGAGTAAAGGCTTTCCCAGCCAGACTCTTCTTGGAAGTTGGTGCTGGTGAGGAGAGCATACTGTACAGGAAATCTGGAAAGCTTCCGttttca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU57036 lncRNA downstream 28273 22008886 ~ 22010107 (-) True G38543
TU56992 lncRNA downstream 161795 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 170919 21867128 ~ 21867461 (-) True G38521
TU56981 lncRNA downstream 198707 21839359 ~ 21839673 (-) True G38515
XR_006250964.1 lncRNA downstream 200775 21836313 ~ 21837605 (-) False LOC122345027
TU57176 lncRNA upstream 750471 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA upstream 750491 22791710 ~ 22793053 (-) False G38634
TU57216 lncRNA upstream 832752 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 995238 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 1086000 23127219 ~ 23131999 (-) False nrgna
XM_043238390.1 mRNA downstream 2066 22020667 ~ 22036314 (-) True castor2
XM_043240544.1 mRNA downstream 36765 21999494 ~ 22001615 (-) True polr2j
XM_043240541.1 mRNA downstream 38968 21997636 ~ 21999412 (-) True alkbh4
XM_043240542.1 mRNA downstream 38996 21997636 ~ 21999384 (-) False alkbh4
XM_043240540.1 mRNA downstream 40963 21989945 ~ 21997417 (-) True lrwd1
XM_043240132.1 mRNA upstream 4080 22045299 ~ 22116025 (-) False doc2b
XM_043240131.1 mRNA upstream 4080 22045299 ~ 22116023 (-) True doc2b
XM_043240133.1 mRNA upstream 96620 22137839 ~ 22211535 (-) True LOC122345718
XM_043240728.1 mRNA upstream 174120 22215339 ~ 22227188 (-) True tmem248
XM_043240726.1 mRNA upstream 189661 22230880 ~ 22240821 (-) False lig3
XR_006251116.1 other downstream 78496 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 154358 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 154358 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 212275 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 418797 21612688 ~ 21619583 (-) True G38355
TU57575 other upstream 1561025 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1710661 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1846084 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2156486 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 2546809 24588028 ~ 24594116 (-) False anapc2

Expression Profile


TU57040 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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TU57040 Expression in each Bioproject

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TU57040 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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