RNA id: TU57383



Basic Information


Item Value
RNA id TU57383
length 1083
lncRNA type sense_over
GC content 0.39
exon number 3
gene id nrgna
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23127212 ~ 23132008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAGAGCGCGCTCAGAGACTCGGcacactgaaagagagagagagagacagcatcTTCACCGATATATTCACTTCAGTCATAGTTTTACTGGACAACAAATCTTAAACTTCACAAACCTGTCATCTCGAATCGCTATGGACTGTCGAAACGAAGGATGCACTCAGCCACAAGATGAGGACATCATGGACATTCCCCTCGATGACCCAGCTGCAAACAAGGCTGCTGCTAAAATTCAAGCTGGTTTTCGAGGTCACATGACCAGGAAGAAAATGAAGGACGACAAGCCTAGAGATGAGAAACAACGAGAGCAGAAGTAGCTAAGAGGACCACCGCCACCACCGCCAGATAGCACATCACTGCAATAACCAGagctcttttgtttaaaaagaaccCTTCAGTGTATGATATGAAAGCATCGACATTCAAACAACATGCAGAGTTTGCCACCTGACTAGCAGACTCTCTCACACTTTCCTCTTCTTCCTTTAGCATTTGAGTGGCTGTTTCTGACTCGAAACAGGTTCACAGCATGACATTATAAATTCGATTCATTTTAAGATAGAAGTTTGTTTGTGATCTGTCAGCTTTCAAATCTGAAGCGTTTTTTCTTGTTGCTTCAAGCAAGGCAAGCCAAATACTCTGTCTGGAGATTTGTTGATTTGTTTGAAGTTGTGCTTTACTTCTTTGGCTGTATTGAATCTTACAATATACAAGTATGCATTTACTAAAAGTCAGTGTTTTTTCTAGCATAAATTTTGTTTATGCCTGTTTAATAAAGCAAATTAAGTTCCTCATATAAGCTTTCTGTGTTCATTGGACCAGCTACTATTTAAATGTTGGTgttgattataataaatatgttcttTACTGCTTagatatattttcaattagtcAAAAAACGTGGTTTACGTGACAAATATATGCAAGCTGTGCAATAAACAGAGAATATTGTTCGTATTtccagacagtgtgtgtgtcagatccATGTGATTCAGTGAAGTATTCCCATAGCTTAATCAATCTTTCAAACACAGAGACTGTATCCTTCAAATAGCACAGATGCTCATTAAAAATggatttgctc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 89749 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 250782 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 334166 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 334166 22791710 ~ 22793053 (-) False G38634
TU57040 lncRNA downstream 1086000 22038380 ~ 22041219 (-) False LOC122344815
TU57395 lncRNA upstream 213590 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 225575 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 470237 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 534842 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 770620 23902619 ~ 23902898 (-) True G38982
XM_043238281.1 mRNA downstream 8075 23105929 ~ 23119144 (-) True hepacamb
XM_043238177.1 mRNA downstream 22244 23098840 ~ 23104975 (-) True ccdc15
XM_043238178.1 mRNA downstream 22244 23100129 ~ 23104975 (-) False ccdc15
XM_043239956.1 mRNA downstream 29960 23086295 ~ 23097259 (-) True slc37a2
XM_043238568.1 mRNA downstream 42294 23078556 ~ 23084925 (-) False pde9ab
XM_043239346.1 mRNA upstream 262165 23394164 ~ 23411152 (-) True LOC122345314
XM_043239345.1 mRNA upstream 262165 23394164 ~ 23411151 (-) False LOC122345314
XM_043239344.1 mRNA upstream 265431 23397430 ~ 23411152 (-) False LOC122345314
XM_043239435.1 mRNA upstream 314698 23446697 ~ 23448138 (-) True btg4
XM_043239361.1 mRNA upstream 363139 23495138 ~ 23505743 (-) True ppp2r1ba
XR_006251119.1 other downstream 1087185 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1167335 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1243197 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1243197 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1301114 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 470245 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 619881 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 755304 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1065706 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1456029 24588028 ~ 24594116 (-) False anapc2

Expression Profile


TU57383 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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TU57383 Expression in each Bioproject

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TU57383 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059580 False 845 mRNA 0.42 3 NC_007116.7 58372164 ~ 58382655 (+)
grasscarp (Ctenopharyngodon idella) TU286927 True 1097 lncRNA 0.39 3 CI01000059 2714553 ~ 2719772 (-)