RNA id: TU57397


Basic Information

Item Value
RNA id TU57397
length 574
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G38769
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23357574 ~ 23358147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctccgggtagtgcagctcgcgacagctcgtcggctgcctggttgcacactcctggaatgtgaatggcgagaagcgacctcagaacttccgactccataggaggaggaggtggtgggctagttgcgacatacgacgggagcgtagaccaccttgttggttgatgtacgcaacggtcagtatgttgtctgtgcagactagtacatgctggcctcgaaggcagttctcgagactgcctagggcgagatgtactgccagcaactttaggcagttgatgtgccattgcagttgagggcccgtccaaacccctgacactgcatgcccgttgtacgtggcccctcagccggtggtggaggcatccgtgaaaccacagcatacctggagaccttctccaggggcactccggcccgaaggaacgagaggtctgaccacggggtgaaggtttggcggcaggccggtgttatttgaacccggtgagtgccactttgccacgcccacctcgggactcgatcgtgtagccaatgttgaagcggtctcatatggattagtcccagcggcatcactgtggccgcggct

Function

GO:

id name namespace
GO:0060606 tube closure biological_process
GO:0001843 neural tube closure biological_process
GO:0014020 primary neural tube formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57395 lncRNA downstream 11777 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 225575 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 320104 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 481137 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 564521 22791690 ~ 22793053 (-) True G38634
XR_006250995.1 lncRNA upstream 244089 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 308694 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 544472 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 619029 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 621517 23979664 ~ 23997739 (-) False aatf
XM_043240775.1 mRNA downstream 225566 23127212 ~ 23132008 (-) True nrgna
XM_043238281.1 mRNA downstream 238430 23105929 ~ 23119144 (-) True hepacamb
XM_043238177.1 mRNA downstream 252599 23098840 ~ 23104975 (-) True ccdc15
XM_043238178.1 mRNA downstream 252599 23100129 ~ 23104975 (-) False ccdc15
XM_043239956.1 mRNA downstream 260315 23086295 ~ 23097259 (-) True slc37a2
XM_043239346.1 mRNA upstream 36017 23394164 ~ 23411152 (-) True LOC122345314
XM_043239345.1 mRNA upstream 36017 23394164 ~ 23411151 (-) False LOC122345314
XM_043239344.1 mRNA upstream 39283 23397430 ~ 23411152 (-) False LOC122345314
XM_043239435.1 mRNA upstream 88550 23446697 ~ 23448138 (-) True btg4
XM_043239361.1 mRNA upstream 136991 23495138 ~ 23505743 (-) True ppp2r1ba
XR_006251119.1 other downstream 1317540 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1397690 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1473552 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1473552 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1531469 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 244097 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 393733 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 529156 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 839558 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1229881 24588028 ~ 24594116 (-) False anapc2

Expression Profile