RNA id: TU57575


Basic Information

Item Value
RNA id TU57575
length 1494
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC122345364
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23602236 ~ 23605748 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTTCAGCCCGGCGGCTCAGGTTTGTCTTTACCTTATTTCGGAAACACGGAAGAACAGAAGTCCCAGCAGAAACAGCGTGCAGCTGTGAAAACTGATTCCCAGCAAACAACTCGCCCCTAGGCCCCTGCCGGAATATTCGAGGAGAATCGGACCGGTTATGTTTCACCAGTTTTAGCAGACTGAAACTGGAACCGAGGCTCTTGATTATTCATTTGTGACGTGCTTCTCCAGCCTGACGCCATGAACATCTCTCTCGAGAACCCCTACGGCGACGTCGCCATTCCTCGTGCCAAACTGCGGGATCAGGCCGACTCCAGCACCATCATCATGAACCCGATGGCCTTGGAGAGCGCCTACAACAACCGCAACTCTGCCTTAAACCCCTACAACAGCTTCAAAACCCCGGGCGAGAGCAACACCTCAAGCGTGCCAGTTTACGGAGAGGCCAGGAACGGCGGCCAGAACCCCCCTCCGGCTTACGCGGTGAGGGAGAGCGACGAGCAGGTGGGGCGCTGCTACGCCTGTTGCTGCCGCTGCCGGAGGAGGAAGTGACACCAGATTCTTCCCGTGAAGCCAAGGATTATGGGTTTACAATTTGGAACCACGATTCCACCTCCCAAAGTTTGGAAGCCAAATGCTCTGCGTTTCTAAAAtgactggattttttttttttttttttttttttagtttttgcacCGTACATGTTTGGACAAAACAAGAGCTGACCTTCCGTGACCGCACCGAAAccttttacattaaatatttacattcggATTACATCATTGTTTTGTTAAGTTGGCACATTTAAGTTCAGCTGAAATTGCACCTACTGAACCACATTAAAGCGGCCTTGTTTTTGTGTGCCTCGAACAATGGCATTCCCAGATACTCGTTTTGGCGTCACCCAATTGTTCCCATACTCTTGCTTTACAATAAgttatttgatttaatgttgTTTCTATAAATGTACGATGAGGTTAAACGGGTTTTACTGGCGCACACAGAGGTGGTCTCTCTTTATGATACGTCCCGGTGGACCTCTCCGGGtttctttagatttttgagCCACACCCTGACATGCCGTCTGACACAGGTGACTGAAACTTGAGGAAAAACCCTTGTTCTTTTTCAAAGGGATGCACCAAAAGACACTCTCAACTTTTACTGCGGAACGAGTGTGCCATCTGAGTTTCTATTGAACGAGCTTTTCTGGTTACTTCAGACATACTGCTGACACATTGTGTCTAGGATTGCCAAAGAGACTACTTAGTGCAACATAAAACCCTTATAGTactaatattatacaattataagCAATACTGTGGTagttacatttaatacaatGGGTCatggacagtttttttttgttttttttggccatAAGACTGTGAGCCTGACTATTGTAAATAGTCCAACCAAAATGTTTTGGATGTCTGTATGTGTTAGGCACGTTGatcagtatatttttttttgatataaaatCACCTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57397 lncRNA downstream 244097 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 256447 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 470245 23127219 ~ 23131999 (-) False nrgna
TU57350 lncRNA downstream 564774 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 725807 22873971 ~ 22876437 (-) True G38658
TU57600 lncRNA upstream 62108 23666841 ~ 23669869 (-) True G38892
TU57729 lncRNA upstream 297886 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 372443 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 374931 23979664 ~ 23997739 (-) False aatf
TU57811 lncRNA upstream 463897 24068630 ~ 24069914 (-) True G39050
XM_043239446.1 mRNA downstream 39493 23559354 ~ 23562751 (-) True cryabb
XM_043239384.1 mRNA downstream 47757 23548715 ~ 23554487 (-) False bicdl2
XM_043239386.1 mRNA downstream 47798 23548715 ~ 23554446 (-) False bicdl2
XM_043239383.1 mRNA downstream 47798 23548715 ~ 23554446 (-) False bicdl2
XM_043239385.1 mRNA downstream 47893 23548715 ~ 23554351 (-) True bicdl2
XM_043239378.1 mRNA upstream 11443 23616176 ~ 23621160 (-) False prpf4
XM_043239377.1 mRNA upstream 11443 23616176 ~ 23621160 (-) True prpf4
XM_043239441.1 mRNA upstream 18767 23623500 ~ 23632691 (-) False slc31a1
XM_043239443.1 mRNA upstream 18767 23623500 ~ 23632685 (-) True slc31a1
XM_043239444.1 mRNA upstream 18767 23623500 ~ 23629927 (-) False slc31a1
XR_006251119.1 other downstream 1562210 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1642360 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1718222 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1718222 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1776139 21809013 ~ 21826105 (-) False akap10
TU57636 other upstream 147147 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 282570 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 592972 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 983295 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 1313087 24917820 ~ 24917893 (-) True trnan-guu_1

Expression Profile