RNA id: TU57636


Basic Information

Item Value
RNA id TU57636
length 1830
RNA type TUCP
GC content 0.46
exon number 2
gene id G38917
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23751880 ~ 23756588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCACATTGCATGGTGACATGCGATGAAACCCTTGCGAATCGCGGCACAAACTTTCCGGTAATCCTTCGACCAAAAGCCCCGCTGCTTCTTGAGAAAGTCCCAGAGATGGTCCCGGGCGAACAGCGCGGCTTCCCGTCCTCCGTGGCCGTCAAACACGGCAAAGAACGCGACGGATCTCCTGCTGTCCCCCGCCGCCGGCTCCGTTCCGTCGCTCTCGTCGGTAGACAGCGTGTTCCTCCACGTTACCGTGACGGGCAAAGGCTTGTCCGCGCAGTCCGGCGGGTCGCTTTCAGAGACCGGCTCCTGATCCGGCTTCGGATCGGTGTGCCCGGCTGCCCGCAGCTCATCCTCGCTGGGCTCGAGCTCCACGATCACCTCGGTTAAATCCTCCATGTATTTCCTTCCTCCTTGTTCGGAGAAGACGCTCACACGCAGTGATAGGTCGGGATTCATGGCCGGTCGGACAGCCGTTGCTGATAGGTCAACCTAAAGACTGCAAACGCGCGATTAAAAGATTCTCGATTTcgtcaaaaacatttattaatccgGGCTcgtcttttgtttattttctaagCTGCCAGTCCTCCCTTCCTTCGCAGACACACGGTAACGCAGGCAGAGCGCTCATCAGCGCCATCTGTTGGACAGGAGAACGAGCACGACGCAGTGGCGGCCAATATTCCCTTACCATCAAACTGAAAGTGCATCGTCTGATGGATCCTCTCTGTAACACTGGCCAGCCACTGCTGGAAACCCAGTGACACATGTGTCTCATCCACAGGCTGGCTACTTCCTGTTTAATTCACCCAAACGcacaaaacacatcaaaatcaacaaactACAATAATGAAAGCCATGTATACCTCATTATAGTTTCAAACTTAAACGGGGAATGGGATCATAAGTCTCTCAAAATCAACCAACATCTGTACTCAAGAACAACGAGAGCACGGGAAGGATACAGAAAtaaagtcaaagaaaaaaaagtgtgtaggAGAGGAAGTATCCGGCAGCACCTGGGTTCACAAGCCCAGCAGAACTTGAGTGTTTTCTGTGAGTGGGCTTGCGCTGGTTTAGGGTGGGAGCAGAAGTATCTTTGACAGCCAGAAGAAACGTGGAGGACACAAAGGAAGCTGTGTGAAACAGTGACAGGTCCACAGAGCCAAAGAATAAAAGAGGAAAACAGATTACAGAGGAGACGGTCAGTAACTACAGAACAGCAGCATTTAGATATCAACAACAGATTTCAGTGGGTGGAGAAGAACAGACTCCGAAAGAGATTCATCTCGAGGCCAAAAGGAAGCTCAGATTTCCTCAAAATGCAGTCATCCATCATTCGCAAAAAATTCCCTGCTTCTCCGTGTATCCGTTTGTGAAATATTCTGGTGAAAATTAAACACGGTTCTAGTGGACTGTAACCCTCGCGTAGACCGTGAGCAAGAAAAATAAGACATTGTCAACTTTCTCTGACtaataatttaagtaaatacagccaaaataaagttaatttgtttttaacttaCGTCTGTGGCGATTCTGTCAGGTGACACTGCAGTTAAAACATGAATTTATCGATTCagactttattttgaatgaggCTGTATTAAAATACAGAGAGCACACAGAGTATGTAAATGGATGTAAAAGGTTGATATTAGGTAGAATGAAAATCAGTACTGTTAAACAATCATGATTGActgcacacaaaataaaagtttttgtttgtataatatatgtgtgttctgtgtatatttattatgcatgtataaatgcacacgtattttcaaaactttacatctatgtatgaaaatatatgtatttacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57600 lncRNA downstream 82011 23666841 ~ 23669869 (-) True G38892
XR_006250995.1 lncRNA downstream 146132 23602236 ~ 23605748 (-) True LOC122345364
TU57397 lncRNA downstream 393733 23357574 ~ 23358147 (-) True G38769
TU57395 lncRNA downstream 406083 23345589 ~ 23345797 (-) True G38767
TU57383 lncRNA downstream 619881 23127219 ~ 23131999 (-) False nrgna
TU57729 lncRNA upstream 146031 23902619 ~ 23902898 (-) True G38982
TU57791 lncRNA upstream 220588 23977176 ~ 23978527 (-) True G39034
TU57774 lncRNA upstream 223076 23979664 ~ 23997739 (-) False aatf
TU57811 lncRNA upstream 312042 24068630 ~ 24069914 (-) True G39050
TU57825 lncRNA upstream 331292 24087880 ~ 24088812 (-) True G39057
XM_043239359.1 mRNA downstream 11484 23733743 ~ 23740396 (-) True tmem232
XM_043239353.1 mRNA downstream 67100 23671287 ~ 23684780 (-) False pja2
XM_043239351.1 mRNA downstream 67100 23671287 ~ 23684780 (-) True pja2
XM_043239352.1 mRNA downstream 67177 23671287 ~ 23684703 (-) False pja2
XM_043239458.1 mRNA downstream 115712 23633681 ~ 23636168 (-) True atp6v1g1
XM_043239366.1 mRNA upstream 224161 23980749 ~ 23990500 (-) False aatf
XM_043239365.1 mRNA upstream 224161 23980749 ~ 23990500 (-) True aatf
XM_043239401.1 mRNA upstream 234703 23991291 ~ 23996276 (-) True lhx1b
XM_043239404.1 mRNA upstream 283118 24039706 ~ 24042737 (-) True mrm1
XM_043239362.1 mRNA upstream 313691 24070279 ~ 24072863 (-) True fzd9a
TU57575 other downstream 147147 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 1711846 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1791996 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1867858 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1867858 21878156 ~ 21884022 (-) False LOC122344823
TU57720 other upstream 130715 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 441117 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 831440 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 1161232 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 1161417 24918005 ~ 24918076 (-) True trnak-cuu_4

Expression Profile