RNA id: XM_043239366.1


Basic Information

Item Value
RNA id XM_043239366.1
length 2783
RNA type mRNA
GC content 0.43
exon number 12
gene id aatf
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23979664 ~ 23997739 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTTCTCCTCACGTTCACGTTTCCGGCGCGCTGTGATGACGTCGGCTTCGAGTTACAGCGTGGGACAAACATGGCAGCTTCTATATCGCAGCAACTCGAGGATTTGTTAAATCCTTTACCACACTTCTTGGATCCAGAGGACGACCAAGATGAAgAGACGAAAGCCAAAGTCATAGAGAAGTTTGATGAAGGTGATGACGACGACGAAGAAGTTTTATCTGGCCATCTGCGGAAGCGTTCTGCTGTAATTCTCACTGATGGTGACCGTCGATATCGTGGCAAGGCTACATCCAGAAAAGATCTACTGAAAGAGTTGGATGGATCAGatgaagatgatgatgatgatgatgaagaaaatgaaatgctggACAAGTACATGGAGTGTATCAAAGATGAtgatgaggaagaggatgaagatGACACTGAGAACGATGAAAAAGAGCAATTCGATGATGATAAGGATCTTAATGGAGATGATAGCTCACAAATGTCCAGTCTAGTGTCTAAAATGAAGGGCACAGACTTTATGAAACTCACAGAGGGAATGGATGATTTGGGAGAAAGTGAGGATGAAGAGGAATCAGCTGACAGTGAAGGAGCGAGTAAGGAAGGCtctgaggatgaggatgaggaagaagaggaggaaacGGCCCTGAGAACATTCTCTAAAGAGAAAGTTGATGAAGAGGTGGAAAAAGGGAAAGCCGTGAAAAATCAGCTTGCTCTTTGGGACCAAATGCTTGAAAGGCgaattaaaatgcagaaagcTCTGGTGACAGCCAATCAGCTTCCACAGCCGCAGACGTTCCCAGAGTTCAAGAGCAGGGGAGGGGCCGAGTACGCCGAAGCTTTGAAAACCAGTCATAAAGCCCTAAAGGCTCTACAGAGGTCTCTGCTGGAACTCCAAGATCTGCTGCTCTTCCAAAACCCTGAAACAAGAGCCATCTCCGAGGGAAAGACATGGGGAGCAAGCGGTAGTGCCAAAGATGATGAAGAGATTAACAGTGAGGATGATATGGAGACTGGAGATGATGGCCAAGAGGAAGAACAGGAAGCGGTGCGAAATGGACCCCCCAAACGAAAACTGGAAATGGCAGAGTATCCCGACTTCATGGCCAAACGGTCTGCTGCTTTTCTGCCTTACCGGGATGCCACCCTGCAGAAATGGTACGACAAGACTCGACTCGCAACGGGCAAGAGCAAAAAGGGTTTCGGCGCATTCGACAGGAACATCCTCACGCAAGTGGAGCAGGTTTTAACGGACAAAGAGAGGCTGGTGAGACGGACACAGACACGCAGGTCTGAATACAGAGTCCTGGGGAAGCCGGAGCCCATCACGCCTGAAATAGACAGCAGCATCACAGAGGGAGAGGCAGCTGAACTGGCGCTGAAAGCTAACATGCACCTTAAAGATGTGGACGAGGAGATTTTCGATGATGATGACTTTTACCACCAGCTACTTCGAGAACTCATCGAGCGCAAAACAAGTGCGACGGACCCCAATGATCAAGTGGCCATGGGaaaGCAGTGGCTTGCCATTCAGAAACTACGTAGTAAAATTAAGAAGAAGGTGGACACCAAAGCCAGCAAGGGCAGGAAgatcagGTTTCACATTCACAGTAAGCTGATGAACTTCATGGCTCCAATAGACCACAGCCGCATGAGTGATGATGCCCGgtCTGAACTGTATCGTTCCCTGTTTGCAAATGGTCCAGTAATGGCACAATGACcaaaacattgtgttttaaactcctgtgtgtgtgtgtgtgtgtgctgcattGTTCTCACACACTCCTGCAGTTGAAATCCTTCAGGGATCCCAGACTCAAACCTAGGTTTTTGTGATTAgctgaaaatgaaacatttgatttgtaaaaacttttttttgtgcctGTTTGTATTAAAATCCCACTTTGTAAACCAACTCATTGTTTTCACTGGtgctttattttacacttaGAACATGGTCACATGTAATGAAACTAAtatgcatctttatttttttacagtacccTTAGTACCATTCATAACTGCACCCCTTGTTTTCTGGTTAATCCCCTCTAAACTAAGTTGTTCTGAGTTTCACACGCTTGCAGATCTACCTAATATaatcagagagagaaaaatacatGCAGACGGTATAAATAAGAGATGGATTTATCAGGACAGTGATAACTGCTCTGGTTGGAATCTGTCTGCATTAAGTGATGCAGAGTAAATGAAGagtaacaaaactaaaatagcaACAAGTCTATGTTGGCTTAATATATTTAGCTGCTTTTGCAGTTAAAACCCttttcaatgttttctttttaaggcaaaaaatgtagtttctatattaaatctgcttaatgcattattatttaattgtaccTGCTGTATTATATTACTCCACATTTTCGTCATCTGCATAAACCATCCTCAGTTATCCACTTCAAGCCTTGGTTATTGTGGCTTCCATAATTTTAATGGTGTATTGAATTGGCGTGATTCAGTTCGGTCTAGTTGGTAGGGTAGTGTGAGAACAGACTGAAACACACACCAAGGAGACTGATTACTGAACTGATAAATCAATGAAAAGGTGTTATTTTTGATACAGATTTTGttctccgtttttttttttttagtttgagaTCTTGGgccttttttttgttacagtatACTGTATTTACGCCATCTATACGTGTGTATTTCAGAGAGGAGGGGAGTCTCACATAAAATAACCTCTGGGGTACCTCAGGGGTCTGTGCTCGACCCTTTTGTATTCAAGAAAGAGCTACAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57791 lncRNA downstream 2222 23977176 ~ 23978527 (-) True G39034
TU57729 lncRNA downstream 77851 23902619 ~ 23902898 (-) True G38982
TU57600 lncRNA downstream 310880 23666841 ~ 23669869 (-) True G38892
XR_006250995.1 lncRNA downstream 375001 23602236 ~ 23605748 (-) True LOC122345364
TU57397 lncRNA downstream 622602 23357574 ~ 23358147 (-) True G38769
TU57811 lncRNA upstream 78130 24068630 ~ 24069914 (-) True G39050
TU57825 lncRNA upstream 97380 24087880 ~ 24088812 (-) True G39057
TU57828 lncRNA upstream 111341 24101841 ~ 24107022 (-) False G39059
TU57829 lncRNA upstream 111341 24101841 ~ 24107263 (-) True G39059
TU57919 lncRNA upstream 221942 24212442 ~ 24212759 (-) True G39120
XM_043239359.1 mRNA downstream 240353 23733743 ~ 23740396 (-) True tmem232
XM_043239353.1 mRNA downstream 295969 23671287 ~ 23684780 (-) False pja2
XM_043239351.1 mRNA downstream 295969 23671287 ~ 23684780 (-) True pja2
XM_043239352.1 mRNA downstream 296046 23671287 ~ 23684703 (-) False pja2
XM_043239458.1 mRNA downstream 344581 23633681 ~ 23636168 (-) True atp6v1g1
XM_043239401.1 mRNA upstream 791 23991291 ~ 23996276 (-) True lhx1b
XM_043239404.1 mRNA upstream 49206 24039706 ~ 24042737 (-) True mrm1
XM_043239362.1 mRNA upstream 79779 24070279 ~ 24072863 (-) True fzd9a
XM_043239415.1 mRNA upstream 91946 24082446 ~ 24086504 (-) False fkbp6
XM_043239414.1 mRNA upstream 91946 24082446 ~ 24086498 (-) True fkbp6
TU57720 other downstream 93069 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 224161 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 376016 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 1940715 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 2020865 21959785 ~ 21959884 (-) True LOC122346220
TU57904 other upstream 207205 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 597528 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 927320 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 927505 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 933648 24924148 ~ 24924220 (-) True trnak-cuu_5

Expression Profile