RNA id: TU58164


Basic Information

Item Value
RNA id TU58164
length 707
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G39285
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24470611 ~ 24479055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCTCGATGGCCTCAAGGAGCTTGAGCAGCATGGGCGGTGCTACCTCTGGAGGTGCGAACTGCTCCGTCAGGTCTACCAGAGAGCTGAAGCTTGCTCAGAGTCCGAGTCTGGCCTTGCAGGCCCTGGGGCCACAGGTAGAGGCCTTGGGGGTCTTGGTTTGGGAGTTGGTGGAGATATCTTTTTCTTGCCGATGAACTCCACATACGTACCAGGAAAGTCCCCCTTTTCCTGAGTGGTTTCATTAAAGCCAGGCAGCCATCCGATTTCATCCGGTCTCTCTTCCATCCCCTCAGTGTAACCAACGGCGAGTAGTGCACCTTTATTGACCGTAAGAATGTCCCCTACATGCAGGTCAATAtcctcctccctctctttcttatAGTCATACAGCGCTCTATACTGATAACCTTCTGCACTCATTTTGATGGTGTCGTCTCCAACTCCTGATGATCGACAAAAATGATGATCGCTCACAAAGGTTCTTCGAACCAATATTTGGATGATACAAGAGTcgaaaagtttttttgtttttctccctaAGACTTTAAGCCTTCATTAACATCATCCACTTCCTAGTCTCTAAGGATGAGTGGATTATGTAAAACTAATAGTCCAATGATTGGGTGCACCTTCAAGGTGCTTTATACACACTCTTCCCATCTGTGTGAGGCCTTATCCTGTGAATCTCACAGAGTAACTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57949 lncRNA downstream 189722 24277474 ~ 24280889 (-) True G39137
TU57951 lncRNA downstream 195006 24275360 ~ 24275605 (-) False tmc2a
TU57934 lncRNA downstream 200115 24269863 ~ 24270496 (-) False tmc2a
TU57931 lncRNA downstream 204598 24265740 ~ 24266013 (-) False tmc2a
TU57922 lncRNA downstream 251084 24218993 ~ 24219527 (-) True G39123
TU58192 lncRNA upstream 40612 24519667 ~ 24520387 (-) True G39296
TU58194 lncRNA upstream 42507 24521562 ~ 24522021 (-) True G39298
XR_006250987.1 lncRNA upstream 144504 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA upstream 144798 24623853 ~ 24624852 (-) False LOC122345299
TU58247 lncRNA upstream 251157 24730212 ~ 24730391 (-) True G39337
XM_043239350.1 mRNA downstream 61098 24406995 ~ 24409513 (-) True cd180
XM_043239343.1 mRNA downstream 152780 24298530 ~ 24317831 (-) True LOC122345313
XM_043239462.1 mRNA downstream 193307 24265464 ~ 24277304 (-) True tmc2a
XM_043238935.1 mRNA downstream 205893 24253333 ~ 24264718 (-) True LOC122345102
XM_043239461.1 mRNA downstream 217980 24230346 ~ 24252631 (-) True pcsk5a
XM_043240303.1 mRNA upstream 51353 24530408 ~ 24530963 (-) True pmchl
XM_043238812.1 mRNA upstream 67093 24546148 ~ 24585135 (-) True npr2
XM_043239193.1 mRNA upstream 108669 24587724 ~ 24594116 (-) True anapc2
XM_043239195.1 mRNA upstream 118032 24597087 ~ 24613743 (-) False tprn
XM_043239194.1 mRNA upstream 118032 24597087 ~ 24613730 (-) True tprn
TU57904 other downstream 270115 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 582931 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 714023 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 865878 23602244 ~ 23604733 (-) False LOC122345364
XR_006251119.1 other downstream 2430577 22039901 ~ 22040034 (-) True LOC122346224
XR_006250980.1 other upstream 108973 24588028 ~ 24594116 (-) False anapc2
unassigned_transcript_960 other upstream 438765 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 438950 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 445093 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 447925 24926980 ~ 24927051 (-) True trnak-cuu_6

Expression Profile