RNA id: TU58269


Basic Information

Item Value
RNA id TU58269
length 5565
lncRNA type intronic
GC content 0.36
exon number 2
gene id G39356
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24840745 ~ 24846363 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCtacctctgctggcttggtgacagccTAGTTCTACCAAACATTTTATCAGTACGGTTGGTTACATTCTTCATCttagagacaaaaaaaagaaaaaatacaggaTGAAAGAGGAATATTTAATGTCTACATGACACACATGAATATCACAGTTCTGCCCATTACTCGTAGCTCATGTAGATGAGAAGGGTCACCCTGACCTGCTACCATGGGTCTGTAAAAGCAACACAACATCAAAGCAACATCTTGCAatagaaattacacacttttatCTGTATTGACTAATATATATGCTATTACTACTTAAATCAATCATAACATAATAAGAgaatttatatcaaaaataataatacagggTCAAGGAGACCAATCAATGGAGCAATGGGCCATATGTAGACTAGGACATagtagtgattttattttttatttaccccattttgctgaaatttcagcaggTGTTTGAGTGCCCTCAACCCATCCAAACTCAAAAGGGATTCATATTCTTGAACTATAGCCCTGAAATCTTTACAAGCATCGTAAGAAGCTGTTATGTCACAATTTAGATCTGGCTCTTCAATGTCCTAATGGTTCATCAGTCAAATACatagtttaatattaatacataaacaacaGTGTGGTAACAAGTAAAGAAAGCAGGGTCTCTGCAAATTTGTCCAAGCCTGCCTTAATTCTTGGGAGAAAAGTGGTGTGCACGGCTCAACCACTAAGTCATGCGATCATTATACCTCCAGTGAGTGCAGCACGTctgtgtgctttttgttttggttgctaTGATTCTGACATCACACCAAATACATTTAATCccattacaatatatatatatatttatgtttaaaaacagttttttatcaataaatgtAAGATGTATAAACAAGATGGCGCGGATTCATGGCAACATACTGTTGTCCTTGTTAtgtgttaaatttttttgtttttgtttggattGTATTGGTGGTATGGTGTCGTATAACAGAATGGAGTTATTGTACATCAGAGACAACATAATTTAGTTTCAGCCAAAACTATCCTTTCTCCAGACATCATTGTGACTGGTCGGATGGATACTCCTATTACGGATGCTAATAATAGTAGTTACAGCATGCCACAAGGAATAAAGAAAGGGTGGCAAGCAGGTGCTTTGGTGTTATGCTTTACTGAGACTTGTCTGAATGAGGATATTCCAACGTTATTCAACGTTACATCAACCGAGATTCTTCTTGTACAGGGCAGTCCGGACTTCAATTGTATGTTTCATGAATCTACGATGGTGCACGGACATTAAGGTAATTTCCAAGGCACGGTCAACTAACTTGGAATTTTTTACCATCAAGTGCAAACCTTTCTTCCAGCTAAGAGACTTCACTTCGGTCATTTTGGTTGGTGTGTAAATTCCACCTCAAGCAGTAGCTATTGATGCATCTCAACAGTTGGTTGTTAATATTCTTCAATTAGAAAACTCATTTCCAGATTCAACGATATTGATTCTTGGGTACTTCAACAATGTCAATTCGAGGAAAATCATACCCAGATTCTAACAGCAAGCTACAGTAATGACCAGGGCTAACAAGACATTAGATAAATGCTACAGTGTGTTTCCTAATGCCTTTCACTCTGTATCTTGGTCAGTCAGACCATAATATGATATTTCTTATTCCTGTTTATTgcttcaaatataaatatatcgcACATGTAAGAAGGATAGTTAAAAAATGGTCTGCTTCTGAAATAAAGACACTAATGGACAGTTTAGAGATTACTGATTGGTCTGTgtttgttgaagcatgtgttaATATCtatacagaaatatacagaAGTGATCAtgtcatatatacatttatgtgaGATGGTTTTTACCTGTtacttaataatataattattatataataataagccACTTTGAAAAAGCagtcaaaagacaaaaagtgtAATTTGGAAAACAAACTGATGACTAGAGACACAGTCTtgatgtcaccaagccagcagagggagccctgacctctgggtgatctgcattcactccctctgcgacaacttcctgtcccaggactataaatactgcagcaagccactcaactgcaggttgcattgttcgcctgtttcaTTGTTTGGATTGCTATTGGTTTGTTTCTAGTTTcctgtttccctggttttgaccctgcctgtctttggatattctgattgtttgctgcctgacctgacctttgcCTGTtcttggattttgtgtttgcctcgtctcttatactcctgtttgccctgttggACGcttgcctgttttgaccatgtcttcatttaataaaagcctgcaaatggatccgcacgcctcagacccctcactCGTGACACTTGAGCAGATTACAGGTTTCAAAAGAAAAGTTCCAGTCATTTCTGATAACATTACATTGTCTGATGAACTTAACATGTTCTACAGTCATATTGTATTGGGGCAGGCTGGTCAGCTAATTCTGCCTTCTGGCCCAGTTCTATGATTCCATCTTTTAAAATAGAAGAGCATGAGGTGAGAAACCTTTTGAGGTGGCAGAATTACAGGAAGACAGCTGGAATATAATTTCAACTGTTTGTCTGGATTCTGATCAATTCAATTATAGGACTGATAGGTCAGTTGAATACGCTGTTGCTCTGTGTCTTCATTCAATCTTGCAACACCTTGTTACTCCTGGCACTTATGCTAGAGTTCTTTTTGTGGATTACAAATCTGCATTTAATGCAATTGTTTCAATGAAACTCTTTGTTAAATTTGAAGAATCAGTCTCTTGCTTTGTGGATTTTCTGCAGAATAGAATAGTAGTTAAGATTAACAACATGATTTCGAGCCATAGAACAATAGGTGTTGGAGCGCCACAAGAGTGCATATTGTCTCCAGggttatattctatatatactAATGATTGTTTCATATAATGAATCAGTTAAAATTTGATACTACATTAATTGGtttgtaataatgaataatgaaataatgatgAAACCAGTTATAGAAGGGAAGTAGTTACATTTGAGTTATACCCACAATCTGAAAGTGAATGTCTATAAAACAAAGGAAACTGTGTTTGATTTTCGTAGgtgtaaaaaatgctgttttaccattaattattaatgatcaGGTAACTGAAAATGTGGAGAGTTTTAAGTTTCTTGGTACCAAAATATCTGTATAACTGAGGTGGCAGTATAGGCTTTATTaagaaattcaatttaaagaCTGTACTTAATTAAGACAGcttaattaatcaatcaatcaatcatttttatttatatagcgcttttaacaacacaggttgcatcaaagcactgtacagtataatgacagggatatatagtgacgagagtgaccaatttcttattaaatgcagagacggtctctgtagtcaattcaacgatagtcactagaagttaagtgtccccaaccaagcaagccagaggcgacagcggcaaggaaacaaaaccccaaaaTTAAGACAGAGTATCAAAAAGTTGATGTGTTTAGGTTTTATAGGGCTGtcatattttttgattttttgattaTAGTGTGGTTTGGCAGCTacacaatacaaacaaaaaagtcatCTGATCTCTGCTGATGACATCTATGTCTCATGTTTGCAGAAAAAAATTCTTAAGGATACCACTCATCCGGCCAAGCATATTTTTACTCCTTTACCCTCAAGTAAACTCATCAGGCACCTATGCATCTGTATTTCATTCTTTGTAATGAGTGGATTAATTTACGTGTGTTCacctgtgtatgtttgtgtaaatgtgttcaaCAGGAATTTCCAGACAGTTATGTTGTTTggcgataaataaataaaatagaattgtgACATTGTGACAAAATAGAAAAGTGACATTGAAATGTTACCTACAGATTACTGAAGTTACAAAATGGGGATAAATGACATTTCAGACAACTGTACCTTTATTTATGAACACTTTTACAGCATATGAAACTTCTTTGGCCAGTGAAGAAGAAAACTTGAAGAAAACTTGAACCAGAAAAgttcctgaaataaaatactttcttGTACAGGGAGGTTGTTATTTGTTGCATTGAAGTACACAACCtgcaaatgcaaaagaaaaaattaataatgcaacaaaaacaacataaattaatacattagaATTGACTGTCTTAGaagcttgtttaaaaaaaaaaaaaattaatatacatcATATTGAATAGACTAAATTTGATAACAGATAACACTGATAACTAATAACACTGTAAATCAAATGCACACATGGTGAAACTGATTTATAGGAACaatccatcaatcaatcaatcaatcatttttatttatatagcgcttttaacaacaggTTGCATCacagcactgtacagtataaggtagaagagtacaatgacagggatgtataatgacgaaagtgaccaatttgttattaaatgcagagacggtctctgtaatcaattctacgataatcactagaagttaagtgtccccaacaaagcaagccagaggcgacagcagcaaggaaacaaaaccccatccgtacaaaattgagaaaaaaaaaacttgggagaaaccagactcagttggggtcagttctcctctgaccggatgcccagcacttaacttccagttcaattttaaacgcagctgtgtcagatagtgtaaatgacttagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatcaggatctggtgatctgtccacgggcgcatctaggttttctggtctctgatgaacataatctctaggtgctgatccaccatctagtctggatacaaactgtgaaaacagattgagaaagagacaggattaatattagcgtagatgccattctgtTTACGATGTCAAGTAAattgtattttaggagtagtgttcccggttccagcaaatctaagtaatgcagcctaaaaatccttgaacggatttgaataataaaaagtatgttggggtgttatgtgtaggctaagttaaaaagatgtgtcttgaatctagatttaaactggcagagtgtgtctgcttcccgaacagagttagggagattgttccagagtttaggtgctagataggaaaaggatctgccgcccaaagttgattttgatattctacgtattatcaaatggccagagttttgagaacgcagcagacgggcaggactataatgtgataagagctcgcgtaagtattgaggagctaaaccattcagggctttataggtaattaataggattttaaaatcgatccgatgtttgatagggagccagttcAGTGTTGAcagtgatcatacttcctagttctagtaaggactctggctgctgcgttttggattagctgaagtttgtttatcaagcatgcagaacaaccacccaataaagcattacagtaatctaacctcgaggtcataaacgcatgatataatatttctgcattagaggttgaaagcataggtcgtaatttagatatatttttaagatggaaaaacgcagttttacagatgctagaaacatggtttttga

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58223 lncRNA downstream 82118 24754204 ~ 24758627 (-) True LOC122345923
TU58257 lncRNA downstream 87423 24753082 ~ 24753322 (-) True G39347
TU58240 lncRNA downstream 92169 24746672 ~ 24748576 (-) True naa38
TU58251 lncRNA downstream 108670 24731639 ~ 24732075 (-) True G39341
TU58247 lncRNA downstream 110354 24730212 ~ 24730391 (-) True G39337
TU58270 lncRNA upstream 15580 24861943 ~ 24863191 (-) True G39357
TU58278 lncRNA upstream 66283 24912646 ~ 24912939 (-) True G39365
TU58279 lncRNA upstream 78344 24924707 ~ 24924947 (-) True G39366
TU58288 lncRNA upstream 170198 25016561 ~ 25016841 (-) True G39375
TU58290 lncRNA upstream 172886 25019249 ~ 25019491 (-) True G39377
XM_043240635.1 mRNA downstream 58097 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA downstream 58097 24759478 ~ 24782648 (-) True taf6
XM_043240457.1 mRNA downstream 82077 24754202 ~ 24758668 (-) False LOC122345923
XM_043240470.1 mRNA downstream 89463 24749282 ~ 24751282 (-) True sat2b
XM_043240471.1 mRNA downstream 92135 24747031 ~ 24748610 (-) False naa38
XM_043239176.1 mRNA upstream 384872 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA upstream 384872 25231235 ~ 25263124 (-) True zfpl1
XM_043240265.1 mRNA upstream 457112 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 457112 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 457112 25303475 ~ 25446660 (-) False LOC122345796
XR_006250980.1 other downstream 246629 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 640249 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 953065 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 1084157 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 1236012 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 71457 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 71642 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 77785 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 80617 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 86543 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile