RNA id: TU58377


Basic Information

Item Value
RNA id TU58377
length 1354
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G39456
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25297876 ~ 25299229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccagtgcagtgttgacagaaccgggctaatatgatcatacttcctagttctagtaaggactctggctgctgcgttttggactagctgaagtttgtttattaagcgtgcagaacaaccacccaataaagcattgcaataatctaaccttgaggtcataaacgcatgaattaatatttctgcattagaggttgaaagcataggtcgtaatttagatatatttttaagatggaaaaacgcagttttacagatgctagaaacatgattttcaaaggaaagattgcggtcaaacagcacacctaggttcctcaCTGacgatgaagaattaacagagcagccatcaagtgataggctgtgttctagattattatttgtggggtttttaggtccaattattagcacctctgttttttcagaatttaacattaagaagttactcatcatccagaagttactcatcactcttccaccaggaccaggacagcgcttggggggGAGTGTGATGAGCGTCCCGAGGatccatcagcgttgccctgggaacaaacctgGAACACCTGCACCAGCCACTCATCGACGGATTCaccgcacctggagctcgtcaGCCGCGGACCAGATAAGCCCGGCTAGGCGGCGGCTTCAGggagccacgagactccggaCTGCacgctaacctgttgtctctctctttgtctcccagaagctacaccGTGACGGgcctacctgagctaattcccctaTTGCCTCACTGTGGACTCCCTCACTGTTCTGAGCAAGGGAAGCACcaagacgactcaccgctgcactcaccggactcaccgctgcactcaccggactcaccgctgcactcaccggactcaccgctgcactcaccggactcaccgctgcactcatcGGACTCACCGAACTCACCGCTCACGTACCGTGTGTTGCCTAATAAATACACCTTCCGGGGGTTTCAattcacctgtttctcttgtgcttcctctgcctcgccacaatatatatatatatatatatatatatatataaaaacactgcttAGCCAAGTAGAACAAAATGGACATATTAGAACACAAAACCTTCCACAATTGCAATTAAACAGTCattcactgtattttattaatgcttccttaataacattttgtacatgtttgtttgttttatgaatgttttattcatttttatggaaCAGTTATCTTGCATTATCCAGGAACAActaaacttaaaattatataaaaagaattatatttgttttgcacaCTATTCTGCACAATACTGTTAAAATTGTATGTTATGGCCATAGCTTTGTAGGCAACAGCACTTCCATTGATCAGAGCCAGAGTCCTGGCTTAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58318 lncRNA downstream 121527 25175308 ~ 25176349 (-) True G39401
TU58301 lncRNA downstream 246358 25051181 ~ 25051518 (-) True G39384
TU58290 lncRNA downstream 278385 25019249 ~ 25019491 (-) True G39377
TU58288 lncRNA downstream 281035 25016561 ~ 25016841 (-) True G39375
TU58279 lncRNA downstream 372929 24924707 ~ 24924947 (-) True G39366
TU58379 lncRNA upstream 294 25299523 ~ 25299916 (-) True G39458
TU58391 lncRNA upstream 154283 25453512 ~ 25453834 (-) True G39470
TU58411 lncRNA upstream 229654 25528883 ~ 25529111 (-) True G39490
TU58424 lncRNA upstream 258067 25557296 ~ 25557522 (-) True G39503
TU58427 lncRNA upstream 259646 25558875 ~ 25559218 (-) True G39506
XM_043239176.1 mRNA downstream 34748 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA downstream 34752 25231235 ~ 25263124 (-) True zfpl1
XM_043240627.1 mRNA downstream 394587 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA downstream 394587 24814609 ~ 24903289 (-) True LOC122346005
XM_043240635.1 mRNA downstream 515228 24759478 ~ 24782648 (-) False taf6
XM_043240265.1 mRNA upstream 4246 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 4246 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 4246 25303475 ~ 25446660 (-) False LOC122345796
XM_043240266.1 mRNA upstream 4246 25303475 ~ 25446660 (-) False LOC122345796
XM_043240268.1 mRNA upstream 171423 25470652 ~ 25523837 (-) True LOC122345798
TU58333 other downstream 15590 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 302644 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 305781 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 364898 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_963 other downstream 370825 24926980 ~ 24927051 (-) True trnak-cuu_6
TU58432 other upstream 262745 25561974 ~ 25568686 (-) True LOC122344921
unassigned_transcript_987 other upstream 578442 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 588129 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 589285 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 591199 25890428 ~ 25890510 (-) True trnal-cag_28

Expression Profile