RNA id: TU58435


Basic Information

Item Value
RNA id TU58435
length 676
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G39514
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25582339 ~ 25583014 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaagaaattaactttatttgaacaaaaaagtcTTTGTGTAATAATCCCACAAAGGGGTGAAACAGATGGCAGTCTACTCCAGCCACGatcccagctgcagaggaggTGAAGGATGGATCATCTAACCGACACAGTTCGATGGGACAAAAGGTGAACCAGGCCCAACCGGTGGAGCAGGAAAAGGGTGGCCGGCCAAAGCGGTCGCCGCGAAGCCTCCCACTGTAGCCACGTCCAACATCCACCCACTAGAAGACCGAGACAGGCACTGGCACCCAAAGGTCGTCGGTGAGGGGAGAGTCCTGAGCTGGGCAAAAAGCGAACTGGAGAGATGGGGGGCAGAAGACAGGgggaaaaactaataaaaatagaaaaaacacaaaaaacaaaaagcattaacTAGACCGAGAACAGGACTAAGACTGGACAAATGCAAACAGATCAGACTGGTCAACAGAGGTTCAGAGTCAGAACGAACTAACATTAGACGAcggactgacaaaggacagaaaatacaaggagattaagtagagagggtaattaacagaaatggggtgcaggagtgtgaaacaattagggttaacaagaggggaggagttaacagcaaagcacatggcgagctgtcaaaacaaagaccatgtgcttcaggacaacaaaacacaagacaaacacaacaag

Function

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process

KEGG:

id description
ko00600 Sphingolipid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58427 lncRNA downstream 23121 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 24817 25557296 ~ 25557522 (-) True G39503
TU58411 lncRNA downstream 53228 25528883 ~ 25529111 (-) True G39490
TU58391 lncRNA downstream 128505 25453512 ~ 25453834 (-) True G39470
TU58379 lncRNA downstream 282423 25299523 ~ 25299916 (-) True G39458
TU58518 lncRNA upstream 145223 25728237 ~ 25728470 (-) True G39572
TU58520 lncRNA upstream 199965 25782979 ~ 25783591 (-) True G39574
TU58525 lncRNA upstream 535460 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 570451 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 789605 26372619 ~ 26373822 (-) True LOC122344941
XM_043238566.1 mRNA downstream 13725 25563039 ~ 25568614 (-) False LOC122344921
XM_043240268.1 mRNA downstream 58502 25470652 ~ 25523837 (-) True LOC122345798
XM_043240265.1 mRNA downstream 135677 25303475 ~ 25446662 (-) False LOC122345796
XM_043240061.1 mRNA upstream 35097 25618111 ~ 25651008 (-) True hip1rb
XM_043240553.1 mRNA upstream 72493 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA upstream 72493 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA upstream 72493 25655507 ~ 25708679 (-) True kntc1
XM_043238251.1 mRNA upstream 949321 26532335 ~ 26544513 (-) True LOC122344705
TU58432 other downstream 13653 25561974 ~ 25568686 (-) True LOC122344921
TU58333 other downstream 300053 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 587107 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 590244 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 649361 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_987 other upstream 294657 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 304344 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 305500 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 307414 25890428 ~ 25890510 (-) True trnal-cag_28
unassigned_transcript_991 other upstream 309315 25892329 ~ 25892409 (-) True trnal-cag_29

Expression Profile