RNA id: TU58520


Basic Information

Item Value
RNA id TU58520
length 613
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G39574
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25782979 ~ 25783591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatggtttagctcctcaatacttgagcgagctcttatcacattatagtcctgcacgtccgctgcgttctcaaaactctggccatttgataatacctagaatatcaaaatcaactgcgggcggcagatctttttcctatctagcacctaaactctggaacaatctccctaactctgttcgggaagcagacacactctgccagtttaaatctagattaaagacacatctttttaacttagcctacacataacacaccaacacaccttttattattcaaatccgttaaaggatttttaggctgcattacttagatttgctggaaccgggaacactactcctacaatacgatgtacttgtgacatcgtaaaaagaatggcatctacgctaatattagtcctgtttctttctcaatctgttttcacagtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaacacctagatgcgcccgtcgacagatcaccagatcctgatgcacacacacacacacgcacacgcacacactaagtcatttacactacctgacacagccgcgtttaaaattgaactggaagttaagtgctgg

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58518 lncRNA downstream 54509 25728237 ~ 25728470 (-) True G39572
TU58435 lncRNA downstream 199965 25582339 ~ 25583014 (-) True G39514
TU58427 lncRNA downstream 223761 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 225457 25557296 ~ 25557522 (-) True G39503
TU58411 lncRNA downstream 253868 25528883 ~ 25529111 (-) True G39490
TU58525 lncRNA upstream 334883 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 369874 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 589028 26372619 ~ 26373822 (-) True LOC122344941
TU58747 lncRNA upstream 1092999 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 1092999 26876590 ~ 26883175 (-) False G39712
XM_043240553.1 mRNA downstream 74300 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA downstream 74300 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA downstream 74300 25655507 ~ 25708679 (-) True kntc1
XM_043240061.1 mRNA downstream 131971 25618111 ~ 25651008 (-) True hip1rb
XM_043238566.1 mRNA downstream 214365 25563039 ~ 25568614 (-) False LOC122344921
XM_043238251.1 mRNA upstream 748744 26532335 ~ 26544513 (-) True LOC122344705
XM_043238939.1 mRNA upstream 770115 26553706 ~ 26566423 (-) True LOC122345107
XM_043240170.1 mRNA upstream 807334 26590925 ~ 26610395 (-) True LOC122345741
XM_043238546.1 mRNA upstream 831551 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA upstream 831551 26615142 ~ 26625008 (-) True kat5b
TU58432 other downstream 214293 25561974 ~ 25568686 (-) True LOC122344921
TU58333 other downstream 500693 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 787747 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 790884 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 850001 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_987 other upstream 94080 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 103767 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 104923 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 106837 25890428 ~ 25890510 (-) True trnal-cag_28
unassigned_transcript_991 other upstream 108738 25892329 ~ 25892409 (-) True trnal-cag_29

Expression Profile