RNA id: TU58799


Basic Information

Item Value
RNA id TU58799
length 2666
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G39738
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27082001 ~ 27084786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACAGTCTTTTAATCAACATTGAAGTACAGCTTGATATTTTAaggcaacattttaattatttaatatcataCTTGCATGTTCATAACTCCTTTATGATGTTTAATGGTCAAATGACAtacaataaagaaattattttgtgttatgcACCTCCTGCAGTTCTCTTATAAACCTTTAGAAAACCATGGTTTTTGTACGGGacagaaaatatgcattaaacaaacataacatttttatttttaaaaagttatttaaaatataaattaataaagctgaatttaagaagttaaaatgaaaaaactaaagttctgttaaatgttttattgtccCTCAGGGAACAATTAAAAGCtagattaaaatgtttaaatataaaaaatctatatatattttttttatttttgatttgtggTCATGATACATGTCCAGGTACTAAAGCTGAAAACTAACAAGCTCACAGAAATATCTATAAAGATGCAATGTCCTTGTAAATCAAAACCAACTAGGGTAAGGTAAAGTAAAGTGAAGCGGGTCAGGAGCTTGTGACAGAAACACACCAATACTGCAGCGTTAAAATGAGTTTCATAGGAAAGAGCATGCTGCTATTTCTGGAAGAAGATGCCTGCATGcgcatgtgtgcatgtgtgtatgtaagaAACGAGTGGACAGATCTCAGTGGGGAACCTCACagcacagctaaaaaaaaaaatctgcaactAAGACACTGTTTATGCTTCATACAGCACCAACACACAGTCAAACAGGGAAAAAAGATGAAGACACAGAAGCTAAGAAAGCACAGGAAGAGATATAGACAGAAAAGAGCCTCAAATCCCTGCACACGTTCCTCTGTGAGAGCACTGCTCTTAACAATTTAATATCGAAGCACTCAAATAAATTCacacatgcattaaaataactcTGCTGTGCCTACTGTTCATAATAAGAGGGGTTATTAAAATCTAATAGAACATGGTAAAGAGGTTTTAGAGGACTGAGTTGAGCTGATCTTGTCCTCAGAACAATTCTGCTAACTCAtggtgcaaaataataataaagggtATTTAGTATTACCTTTGCAAAAGCCGGATCAAGTCACATCCCCCCAATTGTCATCATTACCATTTTTGGTGTCAATTCTTTTTTGactactttacttttttttactttcctaatctaaaaaatatgtatatatatatatatatattatccatCAttatccatcatccatccatgtATTCAATTAGCAATTAGTAAATATAAActcaatatataatattcttttatCTACATCTTACAGTGTATACATGGacctaaatatatatgcacatatatacatacacacacacacacacacacacatatatatatgtataatatgtatattgccaaaagtaacCAATGAACAGGTTTAACTAATTTTGTAATATCCATGATTataaatcttaatgttaaagcataaaGTATTCAAGGGAATTATGTGCATCTGATTTTATAGCaagtttctttctctttctgtctgcatGCGTGCTGTATATGCATGTGCTCAACTCTTTCAGTTCTTTCTATTCTAACATACAATATATAAGGCAaagttaaaaaatgaatgattgaGTCATCTCCTAATCCCAGCTGATcacctctggtgtgactttaaatgcagtccttgagccaaaaactcatcaccaaacaccatTGACATGCACATtcactatatggacaaaaatattGGGACACTCCCTCctgtagaacagaaaaaggcatTTCCAAATCTGTGGCAACAAAGATGGAACCATAATTTGATTTCCATCTCTGTTGCAACCATTTTAGAAGTGTCTAAAAGGACTGCACTCATATGTACAAGTCACTGGTGTTCGGTGAGTTATTGGCTTAAgtactgcatttaaagtcacaccagaggtgttcagctgggattaaGAGTTAGCTTTATGCAGACCAgtcaatcatttcttttttaaccttgccttatacacagaggcactgtcatgttagaatagaaaagggccttttggcaatatagtgtatgtattCCAAAACTCAACTCAGCATTTTGAAGATTTGCATTTTTTGAATGATATATATATCTTGAACTGTATATATCTTAGCATTTTGAACCAGTGTTGACCCACCATTATTGATGCAGTGTGAACGGCTGAGCTCTCTGCGGCTGGGGTCCCGCTGATCTGCCATGCTGGAGGTGGGTGTAAGGAGGGCATGCAGGCCGCTATCCCGAGGCAAGGTGAAGCTGCGGGGTTTCCCGGCTGCATTAACAGGCTCTCGGAGCCTTTCCCCTTCAAGCATTGGAAAGGGACCGTAATGTTCCTGCATCAGTGTGCGTTGTGCAGGTAGAGTGGACTGGCGGCGATATTCTGGAGAAAGTCCGGCCCCTGGCTCGCAGAACACAGCGTCCTCTAGGGGCAGGGTCTGCAGGTAGTGGAGGCCTGAGCTGGTCAGAGGGGTTTCAATCAGGTCCTGCCATGAGCGCCGCTGGCTGGCAGACTTCCGAGCTGGGGAACCTCCTCCGCTGCTGCTGCCGCCTTGCGGTTCGGAGCGGTACTCCTCATGAGAGGAGCGAGACTGTGACGTTTCTGTGGATGAGAGGCGGCCGTGCTTGGGTTCTAGATAAGGACTCGCACAACTCACCTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58747 lncRNA downstream 198826 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA downstream 198826 26876590 ~ 26883175 (-) False G39712
XR_006250952.1 lncRNA downstream 708179 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 928298 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 962918 26118474 ~ 26119083 (-) True G39579
TU58800 lncRNA upstream 15029 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 31181 27115967 ~ 27146962 (-) True LOC122344810
XR_006250927.1 lncRNA upstream 42343 27127129 ~ 27128456 (-) True LOC122344809
XR_006250929.1 lncRNA upstream 44461 27129247 ~ 27146962 (-) False LOC122344810
XR_006250926.1 lncRNA upstream 55629 27140415 ~ 27142600 (-) True LOC122344808
XM_043239546.1 mRNA downstream 67503 27001647 ~ 27014498 (-) True LOC122345427
XM_043239543.1 mRNA downstream 80741 26997549 ~ 27001260 (-) True LOC122345425
XM_043239026.1 mRNA downstream 180327 26897463 ~ 26901674 (-) False unga
XM_043239025.1 mRNA downstream 180760 26897463 ~ 26901241 (-) True unga
XM_043239019.1 mRNA downstream 184779 26884570 ~ 26897222 (-) False LOC122345160
XM_043239542.1 mRNA upstream 10594 27095380 ~ 27099719 (-) True LOC122345424
XM_043239545.1 mRNA upstream 15069 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA upstream 15069 27099855 ~ 27107377 (-) False LOC122345426
XM_043238359.1 mRNA upstream 83479 27168265 ~ 27172894 (-) True LOC122344788
XM_043238698.1 mRNA upstream 192261 27277047 ~ 27280391 (-) True spaw
unassigned_transcript_1081 other downstream 970599 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 972431 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 980592 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 990005 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 992213 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 298135 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 804337 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1171042 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2375799 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2532213 29616999 ~ 29655061 (-) False eng

Expression Profile