RNA id: XM_043239545.1


Basic Information

Item Value
RNA id XM_043239545.1
length 1519
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122345426
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27099815 ~ 27107385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTACAGCCTGGAGTGAGGgacagaaagagtgagagagagaaggtgtTGAACAGAACCAGAACCCGATCACAGAAGTCAAGACCGCTTTAGTGTAttaagagaaagacagaagagagagagagagagaaagattgaCATTTGTCCTGTCTGTCTCACAGCAGGGAACAGCGGTTTACTGTTACGCCAGCAGGAACGTGGACACAACTGCACAGAATGTCTAAACAGCCATCGTCCAACGTAAAAGCCCTGCAGGCCAACCTTAATATTCCGATGGGGGCTCTGCGTCCTGGGGCGGGACATCCTGTGAAGAGGAGAGAAGATACAGTAGATACAGTAGAGGAGGCGTCCGCAGTGACTCCAGAGGAAAAAAAGGCCCTGCCTGGTGCCGTGAAACTACCAGGCCCCGCTGTCGACCTTTCCGAGCTCCAGAATGTAAAAAGCGAACTCAGATGGGTCACCAAGGACTAAACAACACGGGGTGACTCCGCCCCCATTTTATTCGAGGCTTTGGTTATCTCCACCCAATCAGGTTCATGTATTTACAACTCCCAGAAAATCGGTTGCAAAGGAGTCAACGACAAGCCTTAATGATGACACTACCTAGTGACCCGAGAATAATTCAGGGGGTGGATTCTATCAGAGCAAAGACTGATGGGAATTGAGCAACTCGAAGCTCTGAACCAGGGTTTAGTTTGTCTAAAATAGGTCACTGCTTTTTAAACCTCCCTGTATGCTattctgtattttgttttaaaatgtactgtgtGTTTAACTTtaagggatggttcacccaaaaatgcataTTCCTAACCCTCACaagtaaactatccctttaaagtttGATTTTATAGATGTTCTGTATTCTCCTGCTACCATCAATGAATCATAAAACAGAATATATGAGACTGAAGACATTAGCTAGTATGATTCATCTTAAAATTCCACCAttctccttaaaaaaaaagccagattGTGTCTTAAAACAACTCGAACAAATGTGACACCATAAAAtcaattttcttttcatgtattttacatCTAGAagattaatatgcaaataattgctataaatttgattaattagtCAGAATgtcatgcatttaatttgattaagtTTCCTCCGATTGACAGCCCTGCTTAAAACGCCTCATGCTGCAGGCTTGTTTTCACTCCCTACACATCTCTTTATTTATCTATGGCTTTGTTCTTGTGTGTTGCAGTACATGAGTAGGCTGTtgcataataaaacatgatttcacGTTCTCTCCAAGAGCAAACCCGTAGGAGGAAGCCAGCACTTGTTATCCTTGAACAAATTGAACTGGATTTCAAATGCCGCACCATCGGTTTGTTATGTACATAAACTGGGATCAGTTTAACAGTGTAAAGCTGCTTGTCTCCTCACTTGTAAATCACATCATATGTGTCTGTTTTGCTCTATGATCTAGTTTACTAGCAGCAGGTGTCATGGCCTTTGAGTGAAAGTGTCCTTATTAAAGATCATGTATTGCTCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58799 lncRNA downstream 15069 27082001 ~ 27084786 (-) True G39738
TU58747 lncRNA downstream 216680 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA downstream 216680 26876590 ~ 26883175 (-) False G39712
XR_006250952.1 lncRNA downstream 726033 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 946152 26153465 ~ 26153703 (-) True G39585
XR_006250928.1 lncRNA upstream 8588 27115967 ~ 27146962 (-) True LOC122344810
XR_006250927.1 lncRNA upstream 19750 27127129 ~ 27128456 (-) True LOC122344809
XR_006250929.1 lncRNA upstream 21868 27129247 ~ 27146962 (-) False LOC122344810
XR_006250926.1 lncRNA upstream 33036 27140415 ~ 27142600 (-) True LOC122344808
TU58817 lncRNA upstream 33416 27140795 ~ 27142658 (-) False LOC122344808
XM_043239542.1 mRNA downstream 136 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 85357 27001647 ~ 27014498 (-) True LOC122345427
XM_043239543.1 mRNA downstream 98595 26997549 ~ 27001260 (-) True LOC122345425
XM_043239026.1 mRNA downstream 198181 26897463 ~ 26901674 (-) False unga
XM_043239025.1 mRNA downstream 198614 26897463 ~ 26901241 (-) True unga
XM_043238359.1 mRNA upstream 60886 27168265 ~ 27172894 (-) True LOC122344788
XM_043238698.1 mRNA upstream 169668 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 180793 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 194880 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 205510 27312889 ~ 27334798 (-) True inpp5jb
unassigned_transcript_1081 other downstream 988453 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 990285 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 998446 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1007859 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1010067 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 275542 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 781744 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1148449 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2353206 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2509620 29616999 ~ 29655061 (-) False eng

Expression Profile