RNA id: TU59020


Basic Information

Item Value
RNA id TU59020
length 586
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G39870
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27224887 ~ 27225562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttagacatttttaaatgattggtTTCAAAATCAACCAACAGCCTCGTCAATGTACAGAGATagcagtaatgtttttaaattagcaaTATGTTACTGTAGAGGATAAATTGTAATTAGATTATAGTTGTTGACTTCATTTGAATTACTTGGTTGTTTCTGATTACACTTATGTCGACATGCAACCATTTTGGTCAACCATTAATGCTAATAAACCCTCATCAgatagaataaattatatttatataaacatatgcatgtgtgcagCTGATTCATACTTTTCCTGCAGCATTTGGGTTGGCTCCTCTCTCTAAAAGCAGCACTGCTACATCCACCTTCCCATATTTGGCTGCTACATGAAGGGGAGTGAAGCCTTTCTGCATGGCAccTTGGTCATTTTGGTGAGCTGGGCGTTCATGTCCAGGAGAATGCTGGCAGTTTGATTGTGTCCCTCACGGGAAGCGATATGCAGTGGAGTATGTCCTGCTGTTGTGGTGGAGTTGGGGTTTGCCTTGTGCTCCAACAGCAGCTTCACCATCTCGTTGTGGCCCATGCGGGCGGCACAGTGTAGCGGTGTCTGGTCATCC

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59004 lncRNA downstream 35665 27188850 ~ 27189222 (-) True G39857
XR_006250928.1 lncRNA downstream 77925 27115967 ~ 27146962 (-) True LOC122344810
XR_006250929.1 lncRNA downstream 77925 27129247 ~ 27146962 (-) False LOC122344810
TU58817 lncRNA downstream 82229 27140795 ~ 27142658 (-) False LOC122344808
XR_006250926.1 lncRNA downstream 82287 27140415 ~ 27142600 (-) True LOC122344808
TU59023 lncRNA upstream 7096 27232658 ~ 27234162 (-) True G39872
TU59040 lncRNA upstream 39727 27265289 ~ 27267229 (-) True G39888
TU59046 lncRNA upstream 59620 27285182 ~ 27286194 (-) True G39893
TU59120 lncRNA upstream 312926 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 313378 27538940 ~ 27539327 (-) True G39936
XM_043238359.1 mRNA downstream 51993 27168265 ~ 27172894 (-) True LOC122344788
XM_043239545.1 mRNA downstream 117508 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 117510 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 125168 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 210389 27001647 ~ 27014498 (-) True LOC122345427
XM_043238698.1 mRNA upstream 51485 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 62610 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 76697 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 87327 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 117928 27343490 ~ 27389998 (-) True smtnb
unassigned_transcript_1081 other downstream 1113485 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1115317 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1123478 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1132891 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1135099 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 157359 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 663561 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1030266 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2235023 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2391437 29616999 ~ 29655061 (-) False eng

Expression Profile