RNA id: TU59023


Basic Information

Item Value
RNA id TU59023
length 371
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G39872
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27232658 ~ 27234162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAACTAACCCGGTGTGGATGGGGCTTGCTACTGGACTGACATTGTCTGATGTCTCTGTGGCCGGACTGCTGGGGATCAGCGAATCCTCATCGTACTCTTTGGGCAATTCCTCAGTTTGGGCTCTGATCTTTTCTTTTCAATCTAGCTTGAAACATTCTAGTTAATTTCTTCCAGCAGCATTATGAGTTTAGCTCCCCTCTACTTTATACATGTGTCTCGTCTGGTTAAATCTGAACCATCTTCAACATCATCACTGCAACTCTCCCTCGTACTCTAGAACATTCTTGGGGGAAAGGAAATCCTCATCATGGTCCTTTAAGTCGTCCATCTTCAAATACCTGGCACCTTCGTTCCCCAGCAGCTCCTCGC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function
GO:0004852 uroporphyrinogen-III synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59020 lncRNA downstream 7096 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 43436 27188850 ~ 27189222 (-) True G39857
XR_006250929.1 lncRNA downstream 85696 27129247 ~ 27146962 (-) False LOC122344810
TU58817 lncRNA downstream 90000 27140795 ~ 27142658 (-) False LOC122344808
XR_006250926.1 lncRNA downstream 90058 27140415 ~ 27142600 (-) True LOC122344808
TU59040 lncRNA upstream 31127 27265289 ~ 27267229 (-) True G39888
TU59046 lncRNA upstream 51020 27285182 ~ 27286194 (-) True G39893
TU59120 lncRNA upstream 304326 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 304778 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 416288 27650450 ~ 27650827 (-) True G39951
XM_043238359.1 mRNA downstream 59764 27168265 ~ 27172894 (-) True LOC122344788
XM_043239545.1 mRNA downstream 125279 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 125281 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 132939 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 218160 27001647 ~ 27014498 (-) True LOC122345427
XM_043238698.1 mRNA upstream 42885 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 54010 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 68097 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 78727 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 109328 27343490 ~ 27389998 (-) True smtnb
unassigned_transcript_1081 other downstream 1121256 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1123088 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1131249 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1140662 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1142870 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 148759 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 654961 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1021666 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2226423 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2382837 29616999 ~ 29655061 (-) False eng

Expression Profile