RNA id: TU59040


Basic Information

Item Value
RNA id TU59040
length 530
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G39888
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27265289 ~ 27267229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGTGACGATGTTGCCATGCTCATCTGTAAATTGCTCCTCGCTCACTTGCTCTCCTGGAAGATCCTCTGCCTCATCACCCTAGGATTACTCTGCGGCGCACAACACGAGTGGTGACGTTTTCCTCTTCATCGGCTACACCTTCATTCTCACCCAGCTCACGATCCAGCTGAGAGTGAATGTAAGCCAGCACCGATCGGACAGAGCTGCTGGCGATATGCAAGACGTTTTGGCAGCTGATGACCATGAAGGCCAACAGCACGAAGCTGAAGAGCAGCTCAGTCACCAGCGCCCACATAGTGTGGCGGTCGCTCTCTCACAAGCACTCAGAAACAAGCTCCAACAGCGAAGTGAGGTCCAGAGATTTGGGGAAGGATGTTATCTTCCCCTAGTTTCCGTCTTCCACTCTATCCACAGCTTTCATTTAAAGAAAGCAGGCAATTCTTAATCCGAGCCTATTCCTTCCTCTGTCATTTCCACATTCAGCTGTGTTGGGAATGTGGTTGGCTGTAGCTTCCTTTTTTGAccgca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59023 lncRNA downstream 31127 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 39727 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 76067 27188850 ~ 27189222 (-) True G39857
XR_006250929.1 lncRNA downstream 118327 27129247 ~ 27146962 (-) False LOC122344810
TU59046 lncRNA upstream 17953 27285182 ~ 27286194 (-) True G39893
TU59120 lncRNA upstream 271259 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 271711 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 383221 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 481231 27748460 ~ 27789829 (-) True G39964
XM_043238359.1 mRNA downstream 92395 27168265 ~ 27172894 (-) True LOC122344788
XM_043239545.1 mRNA downstream 157910 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 157912 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 165570 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 250791 27001647 ~ 27014498 (-) True LOC122345427
XM_043238698.1 mRNA upstream 9818 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 20943 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 35030 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 45660 27312889 ~ 27334798 (-) True inpp5jb
XM_043238855.1 mRNA upstream 76261 27343490 ~ 27389998 (-) True smtnb
unassigned_transcript_1081 other downstream 1153887 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1155719 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1163880 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1173293 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1175501 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 115692 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 621894 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 988599 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2193356 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2349770 29616999 ~ 29655061 (-) False eng

Expression Profile