RNA id: TU59237


Basic Information

Item Value
RNA id TU59237
length 2533
RNA type TUCP
GC content 0.54
exon number 4
gene id LOC122344874
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27886041 ~ 27895454 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGCTGCTCTCCTGTGGTCCGGCGGAAGTAAGGAGTCTTCCCGGTGAAGAGAGATGGCTCTTATCAAACAGGAGAGTGAAGACCTGAGGATCGTAGAAGTATTCAGCCTGAAACATGAAGAgactgaggaacaaacagCCTTGCATTACCCCTCTTGACTGGCGAAGCCAACCCGGAGCTGCGGAGAGCGATATTGGCGCACGTAGGACTGTCCCCCATTTCGAACACAAGCGGCCAAACTCACTCGACTCGCCCAGCATTGGCTGTTAGAGGGGTCTTCGTCAGCCAGTCAGGTAGCGGAGCAGATCGTTGTAGACCGCTTCCTGCGAGCCCTGCCGCGGTCCTATTGTCAGGCTGTGCGGATGCGGCCCAACCTTGGGAGCCTGGGGAGTGAACCCGAGGGCACCTGACGACCCGTACACAGGCCAATGGTTCCCTCTGCACCAGACGAACCGATTGCCCCCTAGAcctggctggcaggctgcatcGTACACCAAGAACCATCGTCCTTCAGAAGCCGAGCgtaaaaataaacaggaaacCCTACCGAGCCCTCATCGATTCTGGCAGTGCAGTCACACTTGTTCGGGCAAGCATCCTGGCTCCACGGCCGGAAACAAAGGTCTTCATCCCTATAACTTGTGTGCACAGTGAAACATGGCAAGTACCCTCGAGAAGGATTAACCTGTTGACCCTGTCGTCCACCTGGCCCTTTGAAGTCGGTAACGTGAAGGACCTTCCCATCCCGCTGCTATTGGGACGAGACTGGCCCGGTTTTGACCGCCTGCTAGCTTCTGCCTCCCAGCCTGTCAGCCACAGAGGGAACCGCAGACAATGGAGGCCAACCAGAAGGACCCAACACCAGCCAACGCTGCTGGCTTCCGACAGcagaagagatggtgagtccccctTCCAAAATTCTAACCTTTTCCTTGATGTCTTTCAGCAGGTTACGGAAGGGTCTCGTTCGCTAAGGCCCAGAAGGAGGATGACCACCTGAAGCACTGTTGGCCCCAGGTCAGCGTCATTAAATGAGGGGGGAGGAGAAATTATTCGGTGGTTCCTCAATCCAAGACAGAGACGATCCTGGAACTCGCCCTTACGTACCCAATGGCCCAACACTTAGGCGTCGCCAACACATGCCAGCGTATCTGTGATCGATTTCACTGGCCTGGAGGCCGAGGTGAGGAGCTTTTGTCAAGCctgcccttcgagcgcatcgggatggactTGGTAGGACTGTTGCCGAGGCCTACCCAGGGACACGAACACATATTGGTCATCGTGGATTATGCCACCTTATACTTGGAAGTGGTTCCCCCTACGAAAAGCCACCACCAAGGCCATCGCGAAGGAACTCTTCCTTCTCTTTAGTAGGGTTGGCATTCCCAACAAGATCCTGACTGACCAGGGTACCCCCTTCATGTCCCGGCTAATAGCTGACCTCTGCTGGCTGTTGAAGGTGAAGCAGTTGAGGACCACAATCTACCATCCCCAAACAGATGGTCTCGTGGAGCGATTCAATCAAACCCTAAAACAAATGCTACGGCACATGGTGTCCAAAGGCCGACGGGACTGGGACCTGATACTCCTGTATGCGCTCTTTGAAATCCGGGAAGCCCCCCAGGCCTCAACTAGCTCAAGCTCCTCTTTGGCCGGCAGCCCCTTGGCCTCCTGGATGTCACCAAGGAGGAATGGGAACAACACCCAGCACCCCACCGCACCGTAATTGAACACGTAAGGGAAATGAGAGCGAGAAAAGATTGCATCATTGCCATTAGTCCGGGAACATTTGAGCAAAGCCCAACAAGCTCAGCAGCGGCATTACAATCGGGCAGCACAACCATGGGAGTTCCAGCCTGGAGACAAGGCAATGGTCCTTGTTCCCACCTCCGCCTGCAAATTCCTTGCGATTTGGCAGGAACCATACACGGTGATGTAACAAATTGGCCCACTTATCGTCTGCACCAGCCTGGCCAAAGGCGTACTGAACAGTTATACCACATTAACCTACTCAAAAGATGGAGAGGGAACGAGGACCAGATTGCATCCTCTGATCCCGTGGTTGTAGACGTCAACCCCCATCTctcggctgcccagaagggggaGCTCCAGCATCAGATTGGTCAGTTCTCGCATGTGTTCTCATCATGCCCCGGGCAGACGAACGTCATCAAGTACAAGATCCGAACGGCCCCAGGAGTTATCGTCCGGCAACTGCCTTACCAGGTCCCAGAGGCTCGTCAGCAGGGTATTGAGGAGGAAGTACAACAAATTCTCAAGTTAggggtgattgaaccatcgTCACCAAGCTGGAACGGCGAGGCATGCCAGAGAGTTGGTGCTGTCACTAACGTGTTCTCTCCATTTTCTCCTAGACTGCAGCGTGTGATCCGATCAGCCCACACGCCAGGCACAGAGACTCACCAGGGGAAGAGAGCACCGCAGCACCTGTCATGCCTTTGGACACTTTTGCACCCGTatcattcttttgtttatttaataaatctacCCTCCGGggtatttattttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59171 lncRNA downstream 99294 27748460 ~ 27789829 (-) True G39964
TU59154 lncRNA downstream 238296 27650450 ~ 27650827 (-) True G39951
TU59121 lncRNA downstream 349796 27538940 ~ 27539327 (-) True G39936
TU59120 lncRNA downstream 350262 27538488 ~ 27538861 (-) True G39935
TU59046 lncRNA downstream 602929 27285182 ~ 27286194 (-) True G39893
TU59253 lncRNA upstream 189 27895643 ~ 27895961 (-) True G40021
TU59307 lncRNA upstream 284754 28180208 ~ 28180575 (-) True G40057
TU59308 lncRNA upstream 285170 28180624 ~ 28180999 (-) True G40058
TU59328 lncRNA upstream 347207 28242661 ~ 28243655 (-) True G40074
TU59330 lncRNA upstream 350964 28246418 ~ 28246665 (-) True G40076
XM_043240880.1 mRNA downstream 273667 27605812 ~ 27615456 (-) False LOC122346185
XM_043240878.1 mRNA downstream 273749 27605812 ~ 27615374 (-) False LOC122346185
XM_043240879.1 mRNA downstream 278816 27605812 ~ 27610307 (-) True LOC122346185
XM_043238945.1 mRNA downstream 284714 27593593 ~ 27604409 (-) True LOC122345116
XM_043240875.1 mRNA downstream 299213 27575738 ~ 27589910 (-) False ythdc1
XM_043238482.1 mRNA upstream 14773 27910227 ~ 27914589 (-) False LOC122344872
XM_043238481.1 mRNA upstream 14773 27910227 ~ 27914589 (-) False LOC122344872
XM_043238474.1 mRNA upstream 14773 27910227 ~ 27914589 (-) False LOC122344872
XM_043238475.1 mRNA upstream 14773 27910227 ~ 27914464 (-) False LOC122344872
XM_043238480.1 mRNA upstream 14773 27910227 ~ 27914464 (-) False LOC122344872
TU59072 other downstream 490403 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1777721 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1779553 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1787714 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1797127 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59335 other upstream 360374 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 1565131 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 1721545 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2030931 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 2196495 30091949 ~ 30093513 (-) False rnf170

Expression Profile