RNA id: XM_043240921.1


Basic Information

Item Value
RNA id XM_043240921.1
length 2012
RNA type mRNA
GC content 0.55
exon number 22
gene id fubp3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30590843 ~ 30613141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTGTTCCGGGGTCGGTAgtgtgcgctgtgtgtgtgtttatgcgcttgtgtgtgtgagtgtgtgtgatgatgatgatggcggAGCTGGTGCAGGGACAGGCCTCGGTGGCTCAGACCGGGATGAAGGACGGATTCACGGACCCCTTTCACCGCGCGCGGCAGatcGCTAAGATGGGTGGAGAGCAGATGCAGCATCTGAACAACTCGTCTCCGGTGGTCGATGCCTCTCTGTACGGCTACGGAGGGCAGAAGCGCTCGCTGGATGAAGGAGTGGCTAACCAGCTCGGCGCAATGGTACATGGTACAAGggCTATAATAACAGAAGACTTCAAAGTGCCTGATAAGATGGTTGGATTCATCATTGGACGAGGCGGTGAACAGATCACAAGAATTCAGCTGGAATCTAACTGTAAGATCCAGATCGCTGCGGTGCACAGCGGAGGTATGATGGACAGGCCTTGCACCCTGACCGGGACCCCAGAGAGCATCGAGCAGGCCAAGCGCTTGCTGGGGCAGATCGTGGGGTGCCGGAGCGGACCGGGCTTCCATACTCAGATGGACGGGAACAGCGCCGTCCAGGAGATCCTGATCCCAGCCAGCAAAGTGGGCCTGGTCATCGGGAAGGGAGGAGACACCATTAAACAGCTTCAGGAGAGGACAGGAGTAAAGATGATCATGATTCAGGGCGACCCGATGCCCACTGGATCAGACAAACCCTTGAGAATCAGAGACCCTTATAAAGTTCAgCAAGCACGGGAGCTGGTGGTGGAGATCATCAGGGAAAAGGATCAGGGAGACTTCCGCAGCGGCCGCAGTGACTTCGGCTCCAGGCTGGGCAGCAGCATCGACGTGGCGGTGCCCAGGTTTGCCGTAGGAATCGTCATCGGCAGAAACGGGGAGATGATCAAGAAGATTCAGAACGATGCAGGAGTCAGGATCCAGTTTAAGCCAGATGACGGATCAGTCGGACGGATCGCTCAGGTCATGGGTCAGCCGGACCGCTGTCAGCACGCCGTTCACCTCATCAATGATCTGGTCCACACGGCACAGGAGCGTGATGGCTTCGGAGGCCCGGTTGGACCCAGAGGTCGCGGCAGAGGTCGCGGTGATTGGAACATGGGAACTCCTGGAGGCCTGCAGGAAGTGACCTACACAATACCAGCTGATAAATGTGGCCTTGTGATCGGGAAAGGTGGAGAGACCATAAAGAACATCAACCAGCAGTCAGGAGCTCACGTGGAGCTGCAGAGAAATCCTCCTCCAAACACCGACCCCAACGTCCGGATCTTCTCCATCCGTGGATCTCCTCAGCAGATGGAGATGGCCAGACAGCTGATCGACGAGAAGATCGGGGCGTCTGGAATGGGAGGAAGCAGCAGTTTTGGACTCAGTCCTTTTACTCAAGGACCAGCGACTCCTCATCAGAAtggcCCGCAGACGCTCATGACTGGAGGTTGGGGAACCACGCACCAGACATGGCAGCCTCAGAGCCAGCAGGACCCCAGTCACAATGGATCTCAGACCGGCCAGATGGACTATTCCAAAGCGTGGGAGCAGTATTATAAAAAGCTAGGTCAGCAGAACCAAGGCCAGAGCAGCGGCTCCGACTACAGCAAAGCATGGGAGGAGTATTACAAGAAACAGACTCAGGCCGCCGGTCCTGGATCTCAGCAGAGCTCTCCTCCTGATTATAGCGCTGCCTGGGTGGAGTATTACAGACAGCAGGGGGCGTATTACGGCCAGGGACAGACGCAGGCTCCCGGCCTCCCGGATCATTAAAGCGGGCGACTGCAGACCCTTTAGTTGAAGATTTTTGAATCACTGCGAGGAGGAAACAGACCTTTTGTAACAGAGGTTTCTAGATTTGCAACGCCTTGaagacttttactttttttcttagtgAGAAACACTAGCTGTAGAATGActtatatgatttaaaaagagAACTATTTCTAAATCAGGACATCCAATTGTTACTAAATACTTGTGTACACCATTACTCGAATGGGGC

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60227 lncRNA downstream 203 30590197 ~ 30590640 (-) True G40701
TU60224 lncRNA downstream 20743 30567251 ~ 30570100 (-) True G40698
TU60183 lncRNA downstream 24687 30565684 ~ 30566156 (-) True G40672
TU60181 lncRNA downstream 26466 30564117 ~ 30564377 (-) True G40670
TU60202 lncRNA downstream 72388 30516065 ~ 30518455 (-) True G40684
TU60251 lncRNA upstream 17919 30631028 ~ 30733360 (-) False G40711
TU60254 lncRNA upstream 66049 30679158 ~ 30731238 (-) True G40711
XR_006251069.1 lncRNA upstream 95664 30708773 ~ 30710678 (-) True LOC122345983
TU60290 lncRNA upstream 95761 30708870 ~ 30709891 (-) False LOC122345983
TU60247 lncRNA upstream 107083 30720192 ~ 30725226 (-) True G40708
XM_043238652.1 mRNA downstream 10515 30576288 ~ 30580328 (-) True LOC122344972
XM_043238655.1 mRNA downstream 48403 30540497 ~ 30542440 (-) False LOC122344973
XM_043238653.1 mRNA downstream 48403 30540497 ~ 30542440 (-) True LOC122344973
XM_043240129.1 mRNA downstream 52928 30535834 ~ 30537915 (-) True LOC122345715
XM_043238953.1 mRNA downstream 67424 30520606 ~ 30523419 (-) True LOC122345124
XM_043240479.1 mRNA upstream 9095 30622204 ~ 30644747 (-) False ass1
XM_043240478.1 mRNA upstream 9095 30622204 ~ 30644737 (-) True ass1
XM_043240481.1 mRNA upstream 9095 30622204 ~ 30644730 (-) False ass1
XM_043239943.1 mRNA upstream 33177 30646286 ~ 30652310 (-) True surf4
XM_043239944.1 mRNA upstream 40054 30653163 ~ 30655957 (-) True surf2
TU59790 other downstream 497330 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 497330 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 664010 29926385 ~ 29926833 (-) False LOC122344966
XR_006251000.1 other downstream 935782 29616999 ~ 29655061 (-) False eng
TU59455 other downstream 1100639 29460585 ~ 29490204 (-) True G40182
TU60256 other upstream 17919 30631028 ~ 30696688 (-) False G40711
TU60253 other upstream 37832 30650941 ~ 30696688 (-) False G40711
TU60266 other upstream 176524 30789633 ~ 30792719 (-) True G40713
TU60335 other upstream 206406 30819515 ~ 30826358 (-) True G40752
TU60340 other upstream 206406 30819515 ~ 30826358 (-) False G40752

Expression Profile