RNA id: TU60247


Basic Information

Item Value
RNA id TU60247
length 4100
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G40708
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30720192 ~ 30725226 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacattCAAACATGAGCTATGCTGACTCTAGAGCTGGGTGATATAGTTAAAGCATTTTGATGATATTTGGATGTGTCACCATCATCTGTAGATAAGattcaaaatgttaaacatgTAGCTGACAAATAAATATTGGACTGTGTCCTACGGGGCGACAGCATTCTTTTAATTCACCATAAGACACGTTCATATGTCAGCTACACACAACTAAACACAGGGAACAGataataagtatataataagtaatcaatttgtaatttttttttacacatttctgtCTATTAAGATCTaaaagatttcctttttttaaataattactacGAATTCAATCTTACAATCTAAAACGTTTTTACTTAACTACTTGAAAAggatattttataaaaacagatatttataatttacaagTTTTGAGTTCGGGGTCGATTTTTTTTTCGAGGATACGTTACTGTTTTTTCAAAgaggcattaaattgatcaaaagcaaagacaattataatgttacacatttctgcttgaaataaatgctgctctttcaACTTTCACAAAAATATCGAACAGCACAACTGTTACTGTAagactgataataatcagaatattagaacgatttctgaagatcatgtgacactgaagacactgAAAAATTctgctgcgcttcacagaaataaattacagctgAACAGATATTCAAACAGAAACCAGCTGTTCAcaattttaacagtatttttatccaataaatgcagcctctgtgAGCAGAAGAcacattcataaatataaaagatagcTCCTCAAACGTTTGAATGCTAGTGTGCTTACGATAAAACAGCGATATatgaaaaaggagaaaaggagGAACCCTGAACCGAGTCTAATGATCTGATCTTTGAAGAAAagtggaaaaatattaaaaatcagcGTGAATATTAGTTCTATCACCCAGCCCTACCGAGAACACACTGTGCGTCTGATGGCTTCGGTCTGTAACGTTTGAACGATAATAAGAGTCAGAAGCAGGACGCCAGACTATGGACACCGACTCTGACGCCGTGAGACACAATGAGCTGAATTTCAGTGATGGTTGCTTATCGTTTAAACGTTGGTATGGTGACGGTTAACTCACCCACACCACTGCACTTACTCCGGCGCTCAGAGGCTCACATTCCGCGGCTAAGAGCAGACGGATGTTCTTATTAGACTGCAGGACTAGAAGGTTAGTCTCGTCTGAGCATTTCTGAATGCTGCATGTACACCGTGCATCATTTCTGCTGCGCTAGCATCATCACCAGAGCCAGGGGTGTGCGATACTCTCCATAGGATTTTATGGATTGCAATATTTGCACAGTGTTCTTGTGCTCTTCGTATTCCAATGCAGGACACGAATGCATCGGACCTGCAGTTTTTGTCGGAtatgttaaacataaaatgcCGAATGCTGATGATAAAACATACcttgaatgtgaaattaaagCCCTAAGCAGGTGGCAGCAGGTCGCTGTTAATAAGTGAGTCGTTCCGCCTCATTGTCACTGAAAtgtttgattcattcaggaacgaaaAGACACTGTCACGCTGATCAGAGAGCAAAAAAAGCGCTTCTGAAATGATGTTTGTTGGggaaatagagcaaaaacagaAGCCACTAAATTCAATTCTTGTGTATGTCACATCAAAACGTCTTTTCTGCCCCGTCCTGTATTTGTGATCATTCtgagtgtgttttaataaactgaatCATGCCGCTAAAGAGCGCACTAGTCTAGACTTCATCATGTAACAACAATTACAGTATTATCACTGaccatatatatttatatttatatatatatcacacacccCAATTCTCTCTTAGATTGTATTTTTGAGAGGCGGTGCTAGCGCTGCAGACATGCACGCCTCAGATCTGAGCGCATTCTGATATGTTTCCAGCACAAGTGTGTTATTTCACGATGAGTGTGTGCTGAGCCTGACCTGGGCACGCTGGGAGGAGCGCGGTTCGGCCGAGACGGGACCTGAGGGGGGGGCCCACCGAAGGGGTCCGGGGAGGCCCCCGGGCGAGAGGGAACGGGCGGCCCTCCGGCAGCAGGGGGCCCCGGGGCCGAGCCGCGGGAACCTGGGCGTGCCGGAGGCCCCGGAGGAGGGGCCCGTCTCTGAGGGGTCGGGCTGGTCGCCGGAGACCTAACGGAGAAATATTGTTTCTTCTCAAtaagCAATCAGCTGATCCTGGAGCCACGCGTCTGTCCCGAACACACCTTCCTCCGGAGCCGGTGCGCTGCACCTGGAGCCACGAGTCGTCCACGGGCGGAGGCAGAGAGGTGGAGACGGTGGTGGTGCTGATGTCTCCGATGATGTTCAGCGCTTCTTTGAGAGCGTGGTACATCCGCAGCATCTCGTCGCGCCGCTGGGCCTGCTCCGCCGACTCCTCCATCAGCGTGTTCTGATCTCCACACGAGTACAGCTGAGCCAGCAGCTCCGCGTTGATGAACTCCTTCGTCTGAGGGACACCAGGAACATCTCACTGCTGGAAATCTGAGCTAAACATAGCTACCGTGGTAAAGGGCTGCTTCTCCAATCTGTCAATAATCACTCGCTCTCCTGTCGTTACAAACCCCGTGAGACCTTCGTTCAGAACACAAACgtagatattttggatgaaatctgagagctatctgaccctccatagacagcgaCAATTGATCCCGCTCCAGAAACTTGAGTCTCAGTGAGTCGACTTCAGTTTTGCAGCACAACAAGAATGTTTtttgcacaaacaaaaataacctaatttactcaaccattcttctccgCCGAGCTGAGAGCATCACGAGAGCTGAGAGACGTCAAATACATCCTGAAgtgctctccaaaatggcagaagacgTGAGTCAGGGGAGAAAAAAATGGTTGGgcaaattgttatttttgttttcttgccgCAAAATGATGAAGAAAGGTCtaacgggtttggaacgacatgagggtgagtcattttcattttggggtgaactaaccctttaatattgTGTATTAAGAACTAGTTTGACTAACGGGAGTTGCCAAGGGTTAAATCTTACTTTTCCAATACAAATAACAGCAATCTACCTTTTTATAACCcctttagaatttaaaaaagtcTTGAAAAGAAGCCATGTTTTCAGACTAGTCTAAACGctcaaaatgagcaaaaatatgACTTTGGTgcagatgctgatatttttCGGTTTATTACGAAATTACGCTGCTTGGTGAAAATCAATGAGATGTTTACGACCGCGCAGCAGATACCGACATCAAATGAATTATGTTTAGATCATTTTATGTCTCCAATATTATATCTTAAGAAGATCAGAGAGAGCAAATGAAGTTCCCTGCCATgcatattaacaataaaaatcacaatttacaaaatatctccatGGAACGTGGtcttaatatcctaatcatttctttggaataaaagaaaagcgGTTGCTGATTCACGTTGTCTTAGTTTATGATATTTCACGAATCAAGCCTTGTTTCAGTCACTTGAGCGCCTCGGCTGCAGACGAGCTTACATTATTGATCATCAGGTGCATGATGGTCTTGGGCATCAGGTCTCGCACAGTCTTGTTGACGATGCTCATGTAAGAGTCCACCAGGTTTCTGATGGTCTCCACCTGCCTCTCCAGCTGAGGGTCCATGGAGTGCATGAACCCGTCCGAGCCGTTCTCGTCTCCGGCGTcgctctgcacacacacacacacacacacacacacacacacacaatcacggAAAACGCCGGCGCAGAAGATGCACGAAAGATCGAAATGCCGCACAAAGCTCGTACCTTTTCCTTCTCCTGAGGGACGCCACGGGAAGCAgcgtgagagaaagagaagagcatTTTAAGGCGCATCGTTTGGATTCATTCATGCTACTCACTTCagaggagtctgaacacacaccaCCACGCGCTCGGGATAGACGCCGGCCCGCAGGAACGACGCTTTCCATCCGTCCACCTCCTCCTGACTCTCACAGGCCAGCTCCAGCTGACGGTAGTCCTTATACACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251069.1 lncRNA downstream 9514 30708773 ~ 30710678 (-) True LOC122345983
TU60290 lncRNA downstream 10301 30708870 ~ 30709891 (-) False LOC122345983
TU60227 lncRNA downstream 129552 30590197 ~ 30590640 (-) True G40701
TU60224 lncRNA downstream 150092 30567251 ~ 30570100 (-) True G40698
TU60183 lncRNA downstream 154036 30565684 ~ 30566156 (-) True G40672
TU60299 lncRNA upstream 45488 30770714 ~ 30772024 (-) True G40739
TU60336 lncRNA upstream 92506 30817732 ~ 30825296 (-) False G40752
TU60329 lncRNA upstream 95899 30821125 ~ 30828314 (-) False G40751
TU60330 lncRNA upstream 95899 30821125 ~ 30828314 (-) False G40751
TU60332 lncRNA upstream 95899 30821125 ~ 30828314 (-) False G40751
XM_043238233.1 mRNA downstream 48096 30660119 ~ 30672096 (-) True ciz1a
XM_043239944.1 mRNA downstream 64235 30653163 ~ 30655957 (-) True surf2
XM_043239943.1 mRNA downstream 67882 30646286 ~ 30652310 (-) True surf4
XM_043240478.1 mRNA downstream 75455 30622204 ~ 30644737 (-) True ass1
XM_043240578.1 mRNA upstream 8878 30734104 ~ 30754940 (-) False golga2
XM_043240576.1 mRNA upstream 8878 30734104 ~ 30754940 (-) False golga2
XM_043240577.1 mRNA upstream 8878 30734104 ~ 30754940 (-) False golga2
XM_043240575.1 mRNA upstream 8878 30734104 ~ 30754940 (-) False golga2
XM_043240570.1 mRNA upstream 8878 30734104 ~ 30754940 (-) False golga2
TU60256 other downstream 23504 30631028 ~ 30696688 (-) False G40711
TU60253 other downstream 23504 30650941 ~ 30696688 (-) False G40711
TU60233 other downstream 107051 30604844 ~ 30613141 (-) False fubp3
TU60232 other downstream 116699 30600901 ~ 30603493 (-) False fubp3
TU59791 other downstream 626679 30091949 ~ 30093513 (-) False rnf170
TU60266 other upstream 64407 30789633 ~ 30792719 (-) True G40713
TU60335 other upstream 94289 30819515 ~ 30826358 (-) True G40752
TU60340 other upstream 94289 30819515 ~ 30826358 (-) False G40752
XR_006251005.1 other upstream 977227 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 996044 31721270 ~ 31722906 (-) True G41035

Expression Profile