RNA id: TU60251


Basic Information

Item Value
RNA id TU60251
length 811
lncRNA type read_through
GC content 0.36
exon number 3
gene id G40711
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30631028 ~ 30733360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTTGTTACACTGAACTTTAATGATGACacgcattcattcattcacctGTTACACTGTGTTACACCTTTCTGTCCAAACACAGAAAGAGGCCCGGTTTATTCCTCCGCACGCAAGCTTCGTTTAAATTAATCACTTACccataataatttaatattcagtAATCATACATGGCGGTCTAGTCTAAACGGTGGAAGCACAATTTGCATAAATGCACCACAAAGATACGCGACACACTCGAGATACGGTATGCCCGGGACAAACTCTTAAATAACGGGAAATCTTTTCCGGTTCGTGGGTTTTACTAAGACTCACAGAGTGGATTGTGGGAAGGTCCGGTGCGGGTGTCGAAGACGGAAACGTGCTACTGGTGTGTGGTACAGATGAAACGGTCCGGTCATGCCACAACGTCAACTATCAGCAACAGGGGCTTTATTATCTTCATAAGTATTACAACAAACGACATAATTACAGTCCACCGCTGGGGAGGCTTGTGTTCATACTcctcaacaaaacacaaacaacacctGAACAAACTGGAATGGTTTCTATGCATAGACCAGCGGTGATATTTATATAACGTATATGATGATATGgaacttttcttttcctttttttttttttttttttttttttttttttttttttttttttatttttttttttttttttttatttaatattaaaaacagaaaaattaaaagttttccttttttttctagtgctgtcaaacgattaatcacattcaaaagaAACGTTTTAGTTTAGATTCGTCcgtttatccatccatccatcaatttatttgtccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60227 lncRNA downstream 40388 30590197 ~ 30590640 (-) True G40701
TU60224 lncRNA downstream 60928 30567251 ~ 30570100 (-) True G40698
TU60183 lncRNA downstream 64872 30565684 ~ 30566156 (-) True G40672
TU60181 lncRNA downstream 66651 30564117 ~ 30564377 (-) True G40670
TU60202 lncRNA downstream 112573 30516065 ~ 30518455 (-) True G40684
TU60299 lncRNA upstream 37354 30770714 ~ 30772024 (-) True G40739
TU60336 lncRNA upstream 84372 30817732 ~ 30825296 (-) False G40752
TU60329 lncRNA upstream 87765 30821125 ~ 30828314 (-) False G40751
TU60330 lncRNA upstream 87765 30821125 ~ 30828314 (-) False G40751
TU60332 lncRNA upstream 87765 30821125 ~ 30828314 (-) False G40751
XM_043240921.1 mRNA downstream 17919 30590843 ~ 30613109 (-) True fubp3
XM_043238652.1 mRNA downstream 50700 30576288 ~ 30580328 (-) True LOC122344972
XM_043238655.1 mRNA downstream 88588 30540497 ~ 30542440 (-) False LOC122344973
XM_043238653.1 mRNA downstream 88588 30540497 ~ 30542440 (-) True LOC122344973
XM_043240129.1 mRNA downstream 93113 30535834 ~ 30537915 (-) True LOC122345715
XM_043240578.1 mRNA upstream 744 30734104 ~ 30754940 (-) False golga2
XM_043240576.1 mRNA upstream 744 30734104 ~ 30754940 (-) False golga2
XM_043240577.1 mRNA upstream 744 30734104 ~ 30754940 (-) False golga2
XM_043240575.1 mRNA upstream 744 30734104 ~ 30754940 (-) False golga2
XM_043240570.1 mRNA upstream 744 30734104 ~ 30754940 (-) False golga2
TU60233 other downstream 17887 30604844 ~ 30613141 (-) False fubp3
TU60232 other downstream 27535 30600901 ~ 30603493 (-) False fubp3
TU59790 other downstream 537515 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 537515 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 704195 29926385 ~ 29926833 (-) False LOC122344966
TU60266 other upstream 56273 30789633 ~ 30792719 (-) True G40713
TU60335 other upstream 86155 30819515 ~ 30826358 (-) True G40752
TU60340 other upstream 86155 30819515 ~ 30826358 (-) False G40752
XR_006251005.1 other upstream 969093 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 987910 31721270 ~ 31722906 (-) True G41035

Expression Profile