RNA id: TU60350


Basic Information

Item Value
RNA id TU60350
length 2539
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G40760
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30920851 ~ 30925197 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAACATCACTgcagGAACTGTGGGAACGTGTTCTGCGCCAGCTGCTGTGATCAGAAGGTGTCGGGTCAGCAGCTCCGTGAGGCCGGTCACGTGTGTCAGGCGTGTTACGGTCACCTGCGTCCCTCCGCCGTCCCTCCAGCGCTGCCCCCTGCTGACCTGGAGCTGGAGAAACCCATCACCGCCAGCTCCAACTGAGCTTCAGAGCACGCTCAGAAGTGCACTTCCTGAAAACATCTCTAATGTTCTCTTAAGGCGAGACACTGCTTCCTCACGCAGCTGATCGACCGCAGACACGTAATGCAAGGTTAGCTTTAAATATGcaaagaatgcatttttaatagttttcaaaatgtgtttttgacgCGTGTGATCCTGGAGCACAGAGGATCCTCAGCAGCGCAGAAATGATCAAATTTTATCTtacgccaaaaatcattaggatgttaagATCATATTACTCATATTtggtaaatttcctaccataagtatatcaaaacttcatttctgattagtaatatgcactgCTAAGTACTTGATTTGAACAGCTTTAAAgctgattttctcaatatttagttttttttgcttcctCAGATTCCAGACAGTTGTATCTCAGGCAGAGATCGTTCGATCACGAAagatcatttattcatctttcacATGATTTCTCTTTCTCGGTCTTTTGTGCTCCTGGGTCACATGTTAGACTCTAAAGTCTTTACTGAGGGAATTGTACTTAGAACAGACAGAAAGCTATATATCTGGACAGTTTTGATGGGAATCAAGCAAATTATAAACGAACAAATTCCTCAGTAAACAGAAACAGTGTCTCGCTTTAAGACGACAACAAACGAGCGTCTTCCTTCCCAAAGATTCAGATTCACCTCAAGATTTAAGTTAAAGTATTTAAGACAAATTCCGAGACGAATATATGATGAAATTATTGTACTAAAGCCGAGAAAATAAGGTTTGTAGATATTAAGGAGTCAAGTTATGTTTACATGCGGCTTCTCTGAGAAATATTGCTCTAGCCAGTCGTTCTAATCTTCACCTTTAAGACGTCTCCTGGGAGTTTTTAGCTTTGGGCGATTCACAGGAATATTCTTCAGAAACGATTAGCGCATTAGTTCAAAAGAATCAATAAAATGGTATGAAAGCCAAGACATGATCCGTGAACATAGTAATACGTTTCTTAAGATCAGTTCCAGGAGGTTGGTAAGATTCACGGACATCTCCTGACTCTGTCTTCATTTCGTGAGTTCTAGTGATTCATGGAAATATTCTTGAGaacatatttcttaaaataaattgcaaagtTTTAACAGTTCACAAAAatcttttgaacatttaatttgattccCGTGAATGTTCTTAGAAAAGACGCTTCTTAAGATTTTTGTAAATTCCAAACTTTATGGAATAGAAGTCGTTTCTTTCATAGGATTCACTTAAATTCAGTTCTGAGGATGTGTCATATTTACTGAATACTGCAGAAAACGCTCAAATCAAaactttattcattatataaggGTCTGTGTTTGACCAGTTTATGACCAACTGTTACTAAATTTCAATAAATCTTTTAAGGaaatatttagtgctgtcaaactatgattaattacatgcaaaataagctcttgtttacatgtgtgtgtgtgtgtttttatatatatatatatacacacacaaacatgcatgtatatatttatatattaaatatgatagaaatagaaatattctgtatatatatacagacgtatgctccacacacacacacttatataacGTAAACAAAAGCTTTGGTTTTGGATGCGATcgatcatttgacagcactaatttaaaaaaatcataagaaACATCTACAAGAACAGAAAATACTCTCGGCTTTCAACACGAGGAGAAAGCACCGGGAATGTTTTTATGTGCGAGTCGGTCCCCGAGCCGCTCTTTTGATCAGTTTCCTGCGGTCATGCTGCAAAAAGACTGAACGGCTCCGAGAGGAAGTGGAGGACGACGGAGCTCAGCGAGAACTTCCTGTAGGACACCTCTCTTAGGATCTGCTTCTCCGGAGCCGTGCACTCGAATCTGTGTCCAGACGGACTGAACGATGAATCCAGCAATACTCCACGGGATCAGAGGAAACCTCCCACAATCCTCTCTGTGTCAGAGCCGCCgcgcttgtgtgaatgacattAAAGCACAACTCACTGCCAACCTGATCCACGTCTGTTTCATCAGCAGCAACTCAAAGCCAGCTCAATATGCATTcgctgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatcagaAGGATCTGATGTAAACACGTTCGGATCGTTCCCATCTCATATTAGAGTAAATAATGAAGTGATTGCTgagagatgaagaaataaatgagtTATTAAGAGCCCGATTAAGAAAAAGGAGACctgtttaatatgaaataagtACATGTTCGCGTGGGACATATGTAATGTTATTAATCAACTTTCCATGAGAGGTGGAGCTATAAAttgccacaaaaaaaatatattttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60357 lncRNA downstream 1251 30888340 ~ 30919600 (-) False G40762
TU60356 lncRNA downstream 1341 30866243 ~ 30919510 (-) True G40762
TU60333 lncRNA downstream 73973 30821125 ~ 30846878 (-) True G40751
TU60329 lncRNA downstream 92537 30821125 ~ 30828314 (-) False G40751
TU60330 lncRNA downstream 92537 30821125 ~ 30828314 (-) False G40751
XR_006250921.1 lncRNA upstream 34247 30959444 ~ 30963507 (-) True LOC122344701
XR_006250922.1 lncRNA upstream 49121 30974318 ~ 30974883 (-) True LOC122344702
TU60379 lncRNA upstream 52412 30977609 ~ 30978322 (-) True G40782
TU60395 lncRNA upstream 113208 31038405 ~ 31039457 (-) True G40794
TU60399 lncRNA upstream 162995 31088192 ~ 31094923 (-) True G40798
XM_043238521.1 mRNA downstream 85117 30831189 ~ 30835734 (-) True rabepk
XM_043238534.1 mRNA downstream 150944 30765631 ~ 30769907 (-) True LOC122344907
XM_043240566.1 mRNA downstream 165911 30734104 ~ 30754940 (-) False golga2
XM_043238243.1 mRNA upstream 17317 30942514 ~ 30951488 (-) True cux2a
XM_043238956.1 mRNA upstream 53396 30978593 ~ 31052589 (-) True mcc
XM_043238245.1 mRNA upstream 128727 31053924 ~ 31064355 (-) True rcl1
XM_043238241.1 mRNA upstream 148846 31074043 ~ 31081265 (-) True LOC122344691
XM_043238248.1 mRNA upstream 183526 31108723 ~ 31112733 (-) True rplp0
TU60335 other downstream 94493 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 94493 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 128132 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 224163 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 777256 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 796073 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 1197087 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 1289079 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 1289095 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile