RNA id: TU60399


Basic Information

Item Value
RNA id TU60399
length 6650
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G40798
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31088192 ~ 31094923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTATTCCATTCTTTTTATCTGTAATTATCCATTTTTTAAGGTTAGTGTGACATCTGGTGTTCACAACGAACGTCGTGAGGAAGAAAGCAGCACGATGTCATCTTCTACTAAAAAATGGGTCTGAAACTACACGAgggtttcatgtttttttacaggctaaaaaagttttttgtttaattgcagtttgtgtttatcttagcagaaaatTAATATCGCACATTTttcatatacataaaatatcattcagtgtaacaatcttaaatttaatttacatttaagacACATTCATTGATGAAatactttcacttttatttgCCACTACCCTATgttttgcccatttgtcagtaagattttatttacacaattaaaACGCGATAAAATTTAATATGgggttgattttgttttgtatattgaCGTTTTTTGACGTTTTTTGACGTATATTGACGAGATTACCAGAAGTGCGTTAATGGCTGACCTCTGTTATGAATTCAGCTCCCGAACCAAactgacaaaataaagataacCGAAAAAACCAAACAGAAACCTTCGAACCCAAAGAGAGCAAATAAATCTGTTCAGTGGGTTTTGAGCGCTCTGTTCAGTTCTAGTTAACTCGAGCCGGTCGCGCTGGTTTCTCCAGAGAGGTGCGGTCATTTAAGATTAAATACACAACGGCCAACGATAGCGtgtgcatactgtatatacagtgcagtgtttataaaaagaaatgcagaaGAGGGaggttttttaatgtttcattaatgtggaattattgttattattatcaaatctcaatattttatgcaagcttatttttgctgctgaataaaaaaataaaaacataatcgACTTCTTATctcacaattatattttttttctctcgaaagtttatatctcacaattcagactaataaaaaagttgcaattatgtatgacattaaataacaataacactttttttattattatccttattcctattactattattattattattgctatttctTGAATATACTTTGgccgttttaacattttttgagagaaacagagagagagacgctttGCTGTAACGCATTACAAATAATTCAAGTTAATTTTATAGAGGTTTTTTTGATGCAATCACTGCAAAACAATGTGAGATGCATAATCAGATCATTTTTTCCAAGTAACTAGCAAagtaatgcattcattttaaatttgcaagAAAATATCCAAGTTACTTTTCTCTACTGTTTATTGTCTGATACCTCTTCTGTCCCCATGTTGAGAAAAATCTTAAGTGCAGAGGCCTTTTCTTCAACCCTGAGTCGTGTCAGTTTCACTTTTGGGGTGAAAGGTTGCCAAATCAGTTGCCAAAAGTaccaattttttattaaaaataccaaGCAAGCCCAGTTTTGGTTGACAAAAAGTaacgtaaaaaataaaatgtttgatcgATTAGCTTTAAGGACCATAATGCTAGTTTGCAAGTTTACAAATTCAATCGAACAGGAGCAACATAatactttctttttaatcaCAGATGTGATGCAGCCTGTTGTGGTTGATTTGCAAACTCGAAATACTGGAGATGTTGTTTTTCTCCTGGCCCTTCCTCTAAGCCGAGcgtaaagaaaacattttgacatgATTAAGACAAAATTATgataaatgcaaaagaaataaagaccGTTTATGTGAAATATGCAGATCAGTTCACTCATTTCTCAATGAGATTCATAAAGCGACCGGATCTTTTCTTTCCAATGGCCGCTCGAATCTCCTCCgtcagtttatttttgttgtttgagatgttttttcCAGCGACCTTCATGAGAGCAGCGATCTCCTCGGCGCTGTAGCTTTTATGAACGGTGCTGTAATCTCCCCGCCACTTCATCACCTCATCTGAAGAAACAGTTGCACGTTTATGTTAGACTTTATTTGGGTGATATTTCAGATTCGTTCAGGAAAGGTTTTCGATCTCGACTCGCCTCTGCAGTTGACCTTGTTAAACAGTGGGATGTGAATCACGGTGGGAGCGTTTTTGCCTTTAAACACGTAGAAGTCCTTGGGTTTGTCCTTGTCTTCATTAGCGGTGTTGACTTCGGGGAAagggatgtttttttctttgcacattttAGCAGCTTCCCTCACTGTCTGCAGCgaagaaacaaaacattgttaCCAGCAAGCTTTTGAGCAGGATGATCGCTTTAttggtattatttatatatgtcattcaatatatatatatatatatgccattcAATAGCTAGACCAGAAATCTTTCTAGGAGAATGTTTTCGGGACGAATCAGCTTCGAATGAATGTGTCTGCTGTTATCGGTACGAATGTAAGCAACatcttttgctgttgttttgactAATTGGAAACCAGAGAATATTGTTAGTTAGATTGTAAATTAGAATGCTatgctaaaacatgctaaatatatttaaattagtagAGAAACATGACTTTGCGTAGCCTCAAAACACTTTGGAGGTCAATGGTGACCCAGGGCAGCCAggttaaacttaaaaaatatcttcctttgcgttcggcagaagaaagaaactcatagaGATTTGGAGCTActtgatggtgagtaaatgacagaatttgcattttcatcaaAGCATGCCAGTGCCTTCGTTTTGCCGTGAGACGCACACCGCCAATGCTTTTTTCTACGGCATGTTCATAAATGTCTtcttacttaaatgtcctaattaatCTATGGCCTAATCCTTGCTTGGATGAAGCCCTATCTATGACTTTCTAGGCTTTTCTAGGATCATTATTAAGGGAAAAGTAGTGTTTTTTGGAGCGATTTCGTCCTTCGCATCGCTCGTAAGCCTGACTGCACGTCTACGTCTTCGCTTTTCCGAGATTTCGTCAGCGTTCGTTCACCTCCGTAAACACGACCGTTATAGGCCTGGTTCTCTAGACCTGCCCGAGAGCTGCTTCTCCAGCTTTTCTTCATCCACTCTGAACTCTTTTGTTAATCTGTTTCTGACCTGGTTTATCCCCACTTCTCCAAGCATCCCCTTCGAGATTAGTCTGTTATTCTTCACGTTAGCACATTTCGTGAACTGGTTCGAAACGTTCAGGCCTACCATGAAAGGATCTCCTTGGCTGAAGTCCAGGGAAATGATGAGGTCGACGTCTCTTTCCTTTCTCAGCACGGAGAAGTACGGAGAGTTCAGCTTCAGTCCGGCGTCTTCGTAGTCTCTCGTCTCGTCTTTGCTAAGAGCGGGGGGCACGTCTCCGCCTGATCAATCACACTGTGACATCAGTCCTTTTATTAGCCTCGTAGAACCGCACGCTTTCGGCGGGTCTGCTCTCACCTGTCATGTTGTGGAGGAAGTTATATTTCCGGCCCCAGATCCAATCATTCAAGCATCTAAAAATGCTAATCCCGGCCTCTGTAAAACAGTTATACTTAGACCTGTATAGCTCCTTAAGAAGCATTTTGACTTGACAGTTGCATcactttttgttattgttttaaatcatgataaatacataaacgtGGTTATCGTGTGTGTAATCCAGATGGATATGCAAATAAGTCTCTCAATTGGAGGCTTTTTAGACATTAGTGACGATTAAACTTACTAAATAGCCAGAAGTTGATCCGACCGCTCAAATTGTTGCACACTTCCGTAGTGAAACTCTTTATGTCCTGCTTTTCATCTCCTGTGCTCTCTTCAAAGGTTTCCACTTTTTTAAGTGAACAAAAGTCCTGATCTCTGCCTCCGGAGAGATCTGTAAGAAATGGCACGATCAACACTACCCTATCTATCTTTTTTCGCAGTTGCTTGCACGTTTTATACGCgtatttagcagatgctttcattCGGAGCGCTTTACAAATGCCGTTTAAACGATGCCGTTGTCGACGAGTACGGATTTTGCATTCGTCCGAAAGTAAAAGGCGCTCTTCGGGAGTCGCCGCGACGTTTACCGTTCAAATTTGCATTGATGGATCTGTCGAAACCCGAAGTGTCTTTGCCGTTCAAAGCGGCGAGGTTCATGTCCGCGAGATCCACGAGCACCTGGTAATATTTCTCTTCAGAAGGGGGGGCCGGATGTTTACCAACAAACTCAAAAGTCGTCTCTTCGTGTTCCCTCTCAGGCCGCTCTGTACGATACATAGTGAATAAAGATGAACACATGTTTATTAATTACGTCGAGGCCCATAGACATAGACACTTTTTCCCAGCAAGTGTGTAAACCCAGAGGTTTTTAGAGGAGCTATATTTCAATTCAAAGTGAAAAGATGGTTTATGCATGACCTGATGTGTGTGCGGTTTCCTGGTTTAGAAAGCgtgtgtgaaaatgtaattaattatatgatgtttaatatatatgttgACATTAATTAGGAGTCATTTACAAGCTTTTTTCtaaactatttatttgcatgcaacTTCAACATCTGTGCCATTAACGGCAACCATTAATAGacgcataaaaataaaagcatacttGTTAATTAAATCAGTTTGTTTGTATCTctacccaaaaaaaaaattgcattttcataatttattccaGATTTTCCATTTCCTTGAATCATTGGTTTGGATTCAAGGGCCGaagattattttagttttgaagGCCACATATAAAATAGCTACCAAAATAATAATCGCTTGACCAAAAGTAATGACTAAGAGTTGACAAAAATGCTGTGATTTTGATTTTGCCTAAAACTAcgaaaaaaatcaaatgactATTAAGCATTTTGTCTCAGGATGAAGTCTAAGACTAAATCGGTAATGCCTGAGAAGAACtagatgaaaaatattttagttcccaatttaaaatcattaaatcaaaGCGGTAAGAAATGCTTTACCTTTCCTCATGGCCTCgagtattttttcttttttatgaaaGAATTCTGAAATCCATTTTAAGATTTCTTCTTTGTTCTGCTGTCCGTCTGCAAAAGCGCTGCCGCAAAGACCTGAGGAAAAACACAACAGTGAGGATCGAATCGCTCGTTTCTAATTTGTGCAAAACCTAGGCCTGCATttttagaaacaaacaaataagaatGAAAGTCCACGCCTCATTTATTTCGCATAAAATTGACACAAATGGCTGCATTTTCCAGTTAATTTGAAGCACTTTTATTTGTACCAGAACAAGAATAAAAGAAGCATTGAAAAGAACACCCTATTAAGAAATCACAGAAACCTATATAAGCTGATGAAGTGTCACAGATATTAATCGCCTGCATGGAGAGGTTGTTTTTGGTCACCTTGCAGGTACAGCATGTCGAATTGCCCCTGGTGGTTTTTCTTGGAGCCGTTCTCAAACTGGCTGCTGAAGTCGCAGGTGTCCACGAACGCCCGGTGAGGGAGTAACCCGCTTCGTAGGGATTGATCTCGAACCAGAGGTCTGCGGACAGACAAACACGTCCGTCTAAGCATCAACacttcagctctctctctctctctctctctctctctacctttGTCATTGCTCTGTTTGCATTGCTTGTCGATCACCGTGTAGATGGGAAACGGATCTCTGCTGTTCTTGCTCCACTGCTCTGCCAGCGTGTGTTCGTCGATCTACGGAATAACACAGCATgtcacttttctttctttttcagtttaatatCCTGTAGGCCCACGGTACACGTCACATGCGTCTACTATAGGGCCCTTGTTGCATTGCATCGTAACTAATAGCATTGTGAATAACGTTTTTAATGTTACGTGCTGTGCATTTCCAACGCTTGTCACAAATATGCAATCACCAGTCCTGACCGGTATAGCTTATTTGACGGACGATTGGCCGATGTTATGAtccggttaaaaaaaaatacataaatagtaGTGAAATTCAGGAGCACTTCATCGGCATCATTTGaccacaaaatataaataacttgtTCTcagtaaaaattatgaaataatctTCTCTGTGCTTTAAACTCAAACGATATGTTGATTGAGCTGCATGCTTTCTCTGAGGAACCATTttaatcttaatatatatatatatatatgtatatataatatatatgtatttttttaactatttattttattttttgcaaacttAGCTATCCTCAAATACTGTCTGTAGtttgttttccttcttttttaacatattattaattcatcattaaagcaatatttttgcGGCTCTTTATCTAGGATTTCAATCTCACATTCATAATTAATTTAACCAACTTTCATTCAATATAGCATTTTAGTGCATGCCTTTTTAAACAGTAAGACGATTGCTTTGTGGTCACTCTCGACTGTAAATCATACCACCCAGCGATTTTTCTAAAATCCGTCCTACGGTCATGAATATTTACCGACCTCTTTCACATACGATGTTACAACTATCGCCGCCCAGAAGTCGGTCAAGTTGAAGAAGACTTTCTCAGAATAATATTTCTTCAATTTGGCGAACTGCTCCTCCCAGCTGACTCCTGGACCGCTGAGTCTCTTGACGATGTTGTCTTTCACGGTCTCTAGTTTGGTGGACCAGTTTTGTTCTTTGTATAATGAAGCCATGCACCTTCAGAGAAGAACATACTGCTCTTAGCTTTgatattcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtctgtctgtgtgt

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0010008 endosome membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60395 lncRNA downstream 48735 31038405 ~ 31039457 (-) True G40794
TU60379 lncRNA downstream 109870 30977609 ~ 30978322 (-) True G40782
XR_006250922.1 lncRNA downstream 113309 30974318 ~ 30974883 (-) True LOC122344702
XR_006250921.1 lncRNA downstream 124685 30959444 ~ 30963507 (-) True LOC122344701
TU60352 lncRNA downstream 162995 30920851 ~ 30925197 (-) True G40760
TU60429 lncRNA upstream 125894 31220817 ~ 31222194 (-) True LOC122344940
XR_006250951.1 lncRNA upstream 125961 31220884 ~ 31222257 (-) False LOC122344940
TU60455 lncRNA upstream 177763 31272686 ~ 31273001 (-) True G40841
TU60456 lncRNA upstream 185254 31280177 ~ 31280431 (-) True G40842
TU60460 lncRNA upstream 236426 31331349 ~ 31347023 (-) False LOC122344987
XM_043238241.1 mRNA downstream 6927 31074043 ~ 31081265 (-) True LOC122344691
XM_043238245.1 mRNA downstream 23837 31053924 ~ 31064355 (-) True rcl1
XM_043238956.1 mRNA downstream 35603 30978593 ~ 31052589 (-) True mcc
XM_043238243.1 mRNA downstream 136704 30942514 ~ 30951488 (-) True cux2a
XM_043238238.1 mRNA downstream 146310 30920817 ~ 30941882 (-) True LOC122344688
XM_043238248.1 mRNA upstream 13800 31108723 ~ 31112733 (-) True rplp0
XM_043238526.1 mRNA upstream 47654 31142577 ~ 31155113 (-) True gusb
XM_043238527.1 mRNA upstream 47654 31142577 ~ 31154983 (-) False gusb
XM_043238259.1 mRNA upstream 96240 31191163 ~ 31196967 (-) True ca4a
XM_043238678.1 mRNA upstream 252036 31346959 ~ 31350449 (-) False LOC122344987
TU60335 other downstream 261834 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 261834 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 295473 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 391504 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 607530 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 626347 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 1027361 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 1119353 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 1119369 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile