RNA id: XM_043238678.1


Basic Information

Item Value
RNA id XM_043238678.1
length 1361
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122344987
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31331349 ~ 31350449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacgcacacatacacacacacacacgcatacaaacGAAAAACAGTATCACGGCTTTAAACGGTTTCtcggtttttattttaaatctgtatttaacctcAGAATGATCTCAAAGTAAAAAAAGGTGCTGAAGTCATTTGTGAGCATTcagttgaattattattatcttcatTTAAGTGATTTAAGTCGGACTAATCATAattatgtactatatataattCCAAACGATTAAGTTCAAAACACAGGAAGTGTAGAAAAGTTATCAAAAGGAATCAGTTACACTGCTTTAGGAAAGCAACTGAAATAGTTAAActcctttttacattttaaatagggtAAAATAAGCACCTTAATTGCTGATTTATAATATTTGGGCAAAAAAAGGATGCAATTCTGATGCTCAAAATGCAAATCAGTGAGATTTTTATAACAATACgtgtataaaatgatataaataacaGCTGTCACTCTATATTTCCAGTAATATGTCTTATATGTCaaacatataatgcaatgcaaccCACCAAAGAATGATGTCTGAATAGTAAAGTAAAGCTAAGCTATTATAATGTTATTCagatatattatgaatatttagcagctctgttttaaatgatgacTGATTCTCAGGTTCAGCAGACCCACATGTTCAGATGTGGTCCGAGCGAAGCCCGGTTCCTCCGCTCTCCTGGAGCTTTCCTCACAGTGACGTGCCTCCCTTCTACTCTAACAAAGTCATCCGCCTCAATCCCTACAACACTCCTCACGGGATCCAGCCCGCTCCCGTTGCTCTGTTTCCACACGAGCCCAAATATATACCTCATCAGCTGACCTGTCCTCCTGGATTTTATCTGCCAGTTTGTCAGTGCTGCACCGCTGCTTTTATTGAAGGTGGAGAAGCAGCTCGGCCATATTCACATTATGCTTATTACCCGCAGAACTATTCACTAAGCCACGATCACAACAGCATCCAAAGCACGACCTGGCCCGCGGAGTCTCAGCGGGGCGACGTGAACCTCGACAGGGTGTTTCAGATGGTGGATGAGCTCCAGGGTCTGCCCAACATCCATGTAGCGCGAGTGGGCTCCCCTGTGAACGTCCAGCGCTCGTCCAGCCCATCAGCTGACCTCGACCCTCCTCAGCGCTCCAGGACAGACACCTCCACGGCCTGCAGAGAGTCTGAGAAGCAAGGAGCCTGCCAACTCCAAGAAGGTCATTCGGCATCCCCGGAGGCCTCGGTAAAGGCTGCTACAGAGGAAGTGACTCAGGGAAGCAGCAGAGACAAACAGCACAGACTCTAGCGTTCCTGCCGTTCGGATCAACCACACTGAGTCTTCGGGACAGCTCGTGCGGATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60456 lncRNA downstream 66528 31280177 ~ 31280431 (-) True G40842
TU60455 lncRNA downstream 73958 31272686 ~ 31273001 (-) True G40841
XR_006250951.1 lncRNA downstream 124702 31220884 ~ 31222257 (-) False LOC122344940
TU60429 lncRNA downstream 124765 31220817 ~ 31222194 (-) True LOC122344940
TU60399 lncRNA downstream 252036 31088192 ~ 31094923 (-) True G40798
TU60683 lncRNA upstream 72636 31423085 ~ 31506097 (-) True G40995
TU60685 lncRNA upstream 85200 31435649 ~ 31495269 (-) True G40996
XR_006251025.1 lncRNA upstream 106051 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA upstream 111485 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA upstream 126942 31477391 ~ 31498094 (-) False LOC122345708
XM_043238259.1 mRNA downstream 149992 31191163 ~ 31196967 (-) True ca4a
XM_043238526.1 mRNA downstream 191846 31142577 ~ 31155113 (-) True gusb
XM_043238527.1 mRNA downstream 191976 31142577 ~ 31154983 (-) False gusb
XM_043238248.1 mRNA downstream 234226 31108723 ~ 31112733 (-) True rplp0
XM_043238241.1 mRNA downstream 265694 31074043 ~ 31081265 (-) True LOC122344691
XM_043239725.1 mRNA upstream 19361 31369810 ~ 31454508 (-) True LOC122345520
XM_043240695.1 mRNA upstream 148040 31498489 ~ 31503030 (-) True hspb1
XM_043239952.1 mRNA upstream 156030 31506479 ~ 31567684 (-) True srrm3
XM_043239951.1 mRNA upstream 156030 31506479 ~ 31567681 (-) False srrm3
XM_043238268.1 mRNA upstream 218331 31568780 ~ 31590397 (-) False LOC122344718
TU60335 other downstream 520601 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 520601 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 554240 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 650271 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 352004 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 370821 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 771835 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 863827 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 863843 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile