RNA id: TU60730


Basic Information

Item Value
RNA id TU60730
length 3843
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G41018
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31691866 ~ 31695788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTCAACAATGAAAACGATGAagcaataaagtgtaaaaacgttttattttaatattttcagtataaTTTAAGATTGAAGTAAATATGCCACTTCTATATAAACATCAGTAAAATGCATGATATGTCAATTATTaaaccacaaaagaaaataatctttttacttcaaaacaaGAATAGAATTGttcaaaattatgtaaatggTACATCTAAAGATAGTAGTTGACCATTAACTCTCGTCAGCCGTTTTAAACTTGCCACAAAAGCCCAATGACACATAAAGGGGAGTGGGGAAGAGTCGAATTATAGTAAGAATGAAGAAACCCTGAAGGCTTTAGAATGACTTTTCTTTATCTATTTGTTTTGAGGATCTGTTCACTTCAGTGGACGCCAGCACCAGAGGCTCTGAACGATTCACTCCTCGTCGGTCATCTTGAGAAGGCTCTGCTTGTCGATCTTGAAGAGCCTCCACCCTTCCTCCAGCGAGAGATCGGACGCTCCGCGCCGCTTGTAGAAGTCAATGGAGGGTTGATTCCACTCCGCCACGATGAAGTGCATGCTGCTGCACCGAGTCCTGACCGCCGTCTGCAGGAAACCAGTCAATGATTGAGAAGAGCGATTGAGCACAAGATATACTGCCAGGAGAAGATTAGAGGTGCTGTATAATGCTGGATCATTAACCCGGGACTAATTATTAACTAGCACGGTCAACTTTGAGCTCCGCTACCCTCATTAAAAAAGATGTACACttctactaaaaataaaagtggccATTTTAAAATCGCATACCTTCCGGTCTTTCTGCATTATATTTGGTATTCAATTCaataatctgtaaatatttgatttagcccttaaaataatatacagaataataataataattacagactTTTGCATGCACAAATAAACTGGATAAACTGCTTACAAGTACttggaattttttttgcatgcgcATGCATAGCAATTTAGTTTCTATATAGCCTACTTCCTTGTGTGTCACTGCCATCTTATTATGAATAAAGCAAGATCAGCGTAATATAGGTCTGTTGGCTAAAAGTCGGCTTTCCTTATAACATCATATCCTCTGTGGTggaggaaaaaattaaatggcacGGAACGACTGCATGCATTTTGCCAAGTTCAGGGGACTATAATAGGGATGGAAAGTTAgcaaaagcaaatatttgtcCATACTCTGCTGTCTCTTCCAGAAAGTTTAAACGTACCTGGCTCAGTTTCTTCAGGATTTCAGACCCAATTCCAAAACCTAATTTTAATGCAAGGAAAAGTGTGTCATGACGGCATCTCATAAACCTGACAACACACTGATAACACACGTATATAAGGTCACATGCATACCTCGAAACTCCTTCATGACGTAGAAGTCCTCCAAGTAGAGCAGTTTCCCAATCCAGGGGTCATAGGTGAAATAATACATGGCAAAGCCAACGATCACATGACCTGGAAACACACTCCAGTCACTCTATTGTTTCCAGCAGCTCAAAggcatttttagcaaataaaaaaaaaataatatctcaGTCTTTTTGCAATTTGGTTTGCGGAAATTAATTTCAGGTGTGATAATTGGCATAACAACCCTGGCATACACCACAGTCATGACATTTTCAATTAATCCatcatttcacttttattatgttgatttgAGCGTTTATACCACACCGtaaacatattttcttacttAGCGATCTTGTCTTGTTTTCCTCTACACATATTCAATCAAGATACAATTACTTGGTAAACATGATATAATTAgttctgtcaaacaattaatcacggttagtcaaaataaaggtttttgtttacataatgcgtatactttgtatattatgtgtatataaatacacacacacatatgtttagaaaatatttccatgcatttccatatatatatataataattaatataaattaatataattaacattatatatatatataattaacattatatatatatatataattaacattatgttatcaaattatatttaaaatatataaacctaacgtgcatttatttacatgtgtgtgtttatttatatgtgtgtttatttatatatacaaaatacatatacatggtacacacacatatattacgcaaacaaacttttattttggatgagatataaaataataaaacatattttttcaagTACAATTGTGATGCATTTTTCTTAGTATCTCATCATTTTGCTCTTTAAGTAAACATACCTTGATATTTGTAccggaaaacaagacaaaaacaccaAGCGAGAGTCTCATTTTTGCAGTGCAGCCAAGTAGGGCTGGGAATCAAAACAAGCGAGAAAGACTTTGACGGAATGCGCCTATAGAGTAAAAGCTGCCGTTGTCATGGCAATCAGAATTGTTTCCCAAACGACGTCCTCAGAATTCTAAAAGAGCGACTGGTTGCCTGTGATTCCCATCCCTAGCTGAAGTTAGTTGGGGGTATAGTGGTATAGTGTGGTGTAAGGCTGGGACGTCCCAGCTCTCGTGGCCTTACCTCTGGTTTATTGTACATGTTACGCTATTGTAAGCGATCTTTCAGTTACCTCCCCGCCCATCCATGTACACGCCACGGGCGATGTACATGGCGAAGCAAGAGACTGTAGCCTGAAGACAATAAATTACAGAGGGGGGATTGGATAAGCGTTCTCGGCAGATGTCAAACAACTCAAATTCTCTGAATTTGAATCTTCAGAATCTTAGAAAAAGACACATCTGTCTCCAGCGACTTCaataaatagttcacccaaacatatCCGCAAATAGCGAAGCTCCAAAAAGAAACTATGTGCAATCCAACTTGAAGTCGTACGGTAGGAATAGACACCAAAGGTgcttttttagttatttttcgACAGTCTTAAATCAAGGTACATTCACTTGAGAAGCGACttgcattggaaaaaaaaagtctgagggtaaagtcacttttaaaataagaaaaatgtctgCTAATGAGGTCAGAAAAATTAACTAGCTGTTCCCATAAATTAGGTTTAAATGACCTGAGCCctttagcagatgtttttttaatatatttaaaaactgtataacTTTTATTGACTCTTTGTTCATATaagaatgtctttaaaaaatccAGTAACACCTTGTTTATGGTTACACccattagttgcttattagatattaaaataattagtcCTAATTAAGGAGATTCTGTATCAATGCCTCATTCTACGTGACCTTATACTACTTGCCTAATCCTAACCAGTACCTTaacaactattaataagcaaattaaatatttgttgagGGAAAAATTACTAATTTTACTAATTAACACGtgttatcaaaaatacaaatatgcattttgaCACTCTCTTTAATTAAGTATActatcattgttttattttatgtatgcaatttttatttatttagcttttttttttttactttaagttAATGTTTCTTGACTGTTTGTGATCAGATCATCCACTCGTTGATTAgcataaaataacagaataCAAGCTTCTCAAGTAAAACAACCCTGAACAGGAAAatcatgcatatatgcataacttatcaaataaatgtataatgcatttttgggtgaactcgtAGTAATGGACTACATGCACTTCATGTTTACAGTATACGTAGCATGCTGTTTCCAAACGCTCTCCGGATGCGCCCGCTTCAACCTGATACGGAAACAAAAGCCGAAGAGCACACGGCGCACTGAATCACAAGCTGCAGCACAGGTTGGGTCTTACCGTCGGTGCTCTGGTGCTGTTCGGTCACCTCAGCCACCATACAGTGATAGAACGGATGATCTCCAAACCCGTCCTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60737 lncRNA downstream 7030 31683968 ~ 31684836 (-) True G41019
TU60767 lncRNA downstream 43254 31646858 ~ 31648612 (-) True G41034
XR_006251025.1 lncRNA downstream 193772 31456500 ~ 31498094 (-) True LOC122345708
XR_006251024.1 lncRNA downstream 193772 31461934 ~ 31498094 (-) False LOC122345708
XR_006251026.1 lncRNA downstream 193772 31477391 ~ 31498094 (-) False LOC122345708
TU60772 lncRNA upstream 16563 31712351 ~ 31732259 (-) True G41037
TU60785 lncRNA upstream 27954 31723742 ~ 31904787 (-) True G41047
TU60771 lncRNA upstream 34744 31730532 ~ 31732259 (-) False G41037
TU60793 lncRNA upstream 101921 31797709 ~ 31798268 (-) True G41051
TU60811 lncRNA upstream 280148 31975936 ~ 31977051 (-) True G41064
XM_043239012.1 mRNA downstream 8286 31674315 ~ 31683580 (-) False srrt
XM_043239011.1 mRNA downstream 8286 31674315 ~ 31683580 (-) False srrt
XM_043239010.1 mRNA downstream 8286 31674315 ~ 31683580 (-) False srrt
XM_043239009.1 mRNA downstream 8286 31674315 ~ 31683580 (-) True srrt
XM_043238915.1 mRNA downstream 20264 31668017 ~ 31671602 (-) False LOC122345089
XM_043239558.1 mRNA upstream 6665 31702453 ~ 31711737 (-) False apooa
XM_043239559.1 mRNA upstream 6665 31702453 ~ 31711734 (-) False apooa
XM_043238572.1 mRNA upstream 37670 31733458 ~ 31735951 (-) True zgc:153704
XM_043239997.1 mRNA upstream 64148 31759936 ~ 31857602 (-) True LOC122345662
XM_043238392.1 mRNA upstream 164108 31859896 ~ 31864890 (-) True zbtb43
TU60335 other downstream 865508 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 865508 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 899147 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 995178 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 6665 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 25482 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 426496 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 518488 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 518504 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile