RNA id: TU60772



Basic Information


Item Value
RNA id TU60772
length 1262
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G41037
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31712351 ~ 31732259 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAAAATACTTTgccttttatttccttttttatcatttttttaaacaaatgtgaagATACATCCATGACAACACAAAGTTTTGAAGTCCTCTTTCCGAAGTGTTTACATCTACACTCTCTCTTTACAGATCTGTGTACAAAACAATAAGTTATAGTCCCATAGATTCCTACTTACATTTAACTATACAACAAAGTTTAAACAGTGACCAAATAAATATCTGCAGTATAAAAAtgatcacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagagagagagagagagacatagagagagatagagagagataaagagagagacagagagagagagagagagagagagagatagagagagatagagagagagataaagagagagacagagagacagagagataaagagagacatagagagagacatagagagagagagagagagagagagagacatagagagagagagagagataaagagagagacatagagagagatagagagagagataaagagagagagagagagagagagacagacagagagagagagagagataaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggagaaggaAGGCCGGGAGCGTCGGGGGGAAGTGATCCCTTCCCGACCGATGGCATCGTTTTTGCTAAATCATTGCTAATGGTGCTGTTCGGACACAAAGAGAGAGGCTGGTTCAGTGCTTCGAGGTCGGGTTCCTCTGGAAACCTCTGGCCAATCACATGCAAAGCTGGATATGACATCATCCATCACAGGTTAGTGGAATTGTGGCCCGAATAAGCGTTATTGGATTCGATTTACGTTTacgcacaaacacaaaacagcgCATTTCCAACACGTCGCTTCCAGCTTTTTGTCACGTCTTGGTAACGAGGAAAGGACGCCAGCCTAGTACACGCTTTCAGTGACCGTTAAGACAATCAGTGGGTAACAGTGAGCATTTGCATTGACCGTATGTGAACAGTACCATCAACATGAAGTCGCCAAGACGAGAGGGTCACCTGGTGAAAAGGTCATTGGCAGCGGCAAACATATCTGATGCATTGCTTTGAGTATAaaccagaaacaaaaaaaaatacaaatcatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60752 lncRNA downstream 10533 31655583 ~ 31701818 (-) True G41023
TU60730 lncRNA downstream 16563 31691866 ~ 31695788 (-) False G41018
TU60732 lncRNA downstream 16563 31691866 ~ 31695788 (-) True G41018
TU60733 lncRNA downstream 16563 31691866 ~ 31695788 (-) False G41018
TU60737 lncRNA downstream 27515 31683968 ~ 31684836 (-) True G41019
TU60793 lncRNA upstream 65450 31797709 ~ 31798268 (-) True G41051
TU60811 lncRNA upstream 243677 31975936 ~ 31977051 (-) True G41064
TU60812 lncRNA upstream 245455 31977714 ~ 31978466 (-) True G41065
TU60963 lncRNA upstream 653868 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 706360 32438619 ~ 32439145 (-) True G41198
XM_043239558.1 mRNA downstream 614 31702453 ~ 31711737 (-) False apooa
XM_043239559.1 mRNA downstream 617 31702453 ~ 31711734 (-) False apooa
XM_043239012.1 mRNA downstream 28771 31674315 ~ 31683580 (-) False srrt
XM_043239011.1 mRNA downstream 28771 31674315 ~ 31683580 (-) False srrt
XM_043239010.1 mRNA downstream 28771 31674315 ~ 31683580 (-) False srrt
XM_043238572.1 mRNA upstream 1199 31733458 ~ 31735951 (-) True zgc:153704
XM_043239997.1 mRNA upstream 27677 31759936 ~ 31857602 (-) True LOC122345662
XM_043238392.1 mRNA upstream 127637 31859896 ~ 31864890 (-) True zbtb43
XM_043239757.1 mRNA upstream 163544 31895803 ~ 31934473 (-) True lmx1ba
XM_043239754.1 mRNA upstream 211596 31943855 ~ 31960848 (-) True mvb12ba
XR_006251005.1 other downstream 614 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 885993 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 885993 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 919632 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 1015663 30631028 ~ 30696688 (-) False G40711
XR_006251008.1 other upstream 390025 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 482017 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 482033 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 482034 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 482036 32214295 ~ 32293782 (-) False LOC122346090

Expression Profile