RNA id: XM_043238150.1


Basic Information

Item Value
RNA id XM_043238150.1
length 5306
RNA type mRNA
GC content 0.43
exon number 15
gene id abcg4a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8138108 ~ 8154780 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGTCAAATACATCACTGCTACTTTAAGCGTCCTCCAGTGAGTAACACGGGCTTTTTTCGGACGAGAGCAGTTACGCCCAGTGCCACAGACGGCCGGGCGTGCCAGGGCTCCTCTGTCCACTGCGCGCTATATCACACTGCGGTGCAGCATCCGGAGGACCGGGCAGGATGAGCGCGACTCCTCTCCACAGAGCTCCACACGCATACTGGGTGAATGCGCAATGATCGACTCGCGGTTTGCCCTTTCGTCAGCCGTCCGAAACGAAACTCCTGGTTCAACACGGATGCTGcgtcttttttaattatgcataactGTTATGTTTGTTTCTGGATAGGAATCGTCGCGGTGTGTTTTCGAGGAGCGCTATGAATGTGACGTCTAGCGGCTTTCTGAAGGAGAAGAGCATCCTCTCCGTCGCCGGTGAGCGGGATCGGGCGTATAACGGAGCACCTTTTTTCTCAGCTGGACTATAGTGCGGGGCCGCTCCTGTTGCtgaagcctgtgtgtgtgtatatataatgctCTCGGGCTCAAAGGAATGAAttggacatttttataaaaaaaaaaaaaaacgagagagaTTCAACTCGAGAGACTCAACGCGTCAAAAAAAGCTCTTGGTATGGCTGCAAAGTCCTTAGAACCGGGATCTGTTTCCATTCCCATGGAGGAGACCAAGCGTGCTGGAGGAGCCCCTACGGATGCTGCCATGCTGACCCACCTGAAGAAGGTGGAGAACCATATCACAGAGGCACAGAGGTTTTCTCACCTGCCTCGGCGTTCAGCGGTGGACTTAGAGTTTACAGAGCTCTCCTACACCATCCGTGAGGGCCCCTGTTGGAGGAGGCGAGGATTTAAGGCCCTTCTGAAGTGTCTTTCTGGAAAATTCTGCAGTCGGGAGCTCATTGGAATCATGGGACCCTCGGGGGCCGGCAAATCCACTCTAATGAACATTCTTGCTGGCTACAGAGAGACAGGCATGAAAGGTCAGATCCTCGTAAACGGGAGACCCCGTGACCTCCGCACCTTCagaaaaatgtcatgttatATCATGCAAGATGACATGCTACTGCCACATCTAACAACACGAGAGGCAATGATGGTTTCAGCTAACCTTAAACTTAATGAAACCATGGAAGTGAAAAAAGAACTGGTGAATGAGATCCTCACAGCATTAGGACTGCAGGAGTGCGCTCACACTCGCACCATTTCTCTGTCGGGTGGCCAGTGTAAACGGCTGGCCATTGCTCAGGAGCTGGTCAATAACCCGCCTGTCATGTTTTTTGATGAACCCACCAGTGGTCTAGACAGCGCGTCCTGTTTCCAGGTGGTGTCCTTGATGAAATCTCTGGCTCAAGGAGGTAGAACCATCATCTGTACCATCCACCAGCCCAGTGCTAAgctgtttgaaatgtttgacAAGCTTTATATCCTGAGTCAAGGTCAGTGTATATATAAGGGAACAGTACCGTACCTTATCCCCTACCTGAAAAACCTTGGACTCCACTGCCCTACGTACCACAATCCTGCAGACTTTATAATCGAGGTGGCCTCAGGAGAGTACGGTGATCTGAACCCTGTGCTCTTCGAGGCGGTTCAGGGAGGCCTGTGCTCAGATGAGAGCAAGAAGAACTCCAGTGACAAGAACGACGCCACCACATCCTGTCCCTCCCAGTGTTATAATGATTCAGGCTACATTGAGAAACACACTTTTGCCACCAGTACCCTGACACAGTTTTGCATCCTCTTCAAGAGAACCTTCATCACAATATGCAGGGACATGGTGTTAACCCACCTCAGGGTGATGTCACACCTGTGTATCGGTGTGCTGATTGGACTACTGTACCTAAACATTGGGAATGATGCCAACAGAGTGTTCAACAACACTGGCTTCCTGTTCTTCTCCATGCTGTTTCTCATGTTTGCTGCACTCATGCCCACCGTCCTGACATTTCCACTGGAGATGTCTGTGTTTATAAGGGAGCATCTTAATTATTGGTACAGTCTAAAGGCATATTACCTGGCCAAGACCATGGCTGACATTCCATTTCAGGTAATTTGTCCGATAATGTACTGCAGTATAGTGTACTGGATGACAGAGCAGCCTCCAGAGGCAGGCAGATATCTGCTCTTTATGGCCCTGTCCACCTCCACTGCTCTAGTGGCTCAGTCTCTGGGGCTTCTCATTGGAGCTGCTTCCACCTCCCTTCAGGTTGCCACATTCGTAGGTCCAGTCTCTGCCATCCCAGTCCTTCTGTTCTCTGGCTTTTTTGTCAACTTTGACACCATCCCCAAATACCTTAAATGGAGCTCCTACGTGTCATATGTCAGGTATGGCTTTGAGGGTGTGATCCTCTCCATCTATGGCATGAATCGCTCAGAGCTGGAGTGTCCCGGAGTGGCGTGCAAGTTCCAGAAACCAGAGGAGGTGCTGCAGATGCTAAATGTGGAGGATGCTAAGCTCTACGTGGACTTCATTGTGCTGGGGGTCTTCTTCTTAATTCTGAGACTTGCCACTTACCTAGTTCTGCGTTACAAAGTCAAGTCAGAGCGCTAGAGCCAAAACTCATCATCActcttttaaatgcacataatgATCTTTTTGCAATGGACGCAGAAGCCAATGAAAATTGATCACTGGGCCATTGTTTGGCAGTGCAACATTTAAccacaatttagtttttttttctacttgaaaaaatatttttgattctCTAAGTATAGaattgttttattcaattttcatttttgaatgtattCCATGCAGTAacagtgtaaatgcattttacccGTGACTGAACTTTGAAGCATGAGTCTCTATTGACAGGACTGGATGTATTTATAATGACAATCCCGTGACAGCTCCTGATAGCATGTGGATTGGCCAACAGCCAACATGCGAGTTTATACCGTATTGAAGGATCATCACATTGTCTCTctgttaatgcatttaattccgACTAAAGAACATCGTCAAAATGTGTTTCGAAGGAGTGTTCTGCATGCTTGAGGCACTTGAGGACTTGCAAGCAGCAGGAGCGAGAGTGCATTagatgttttgaatgaatcgtcCAACCAGCGTATCTTCAATTCCAAGTTTGTCTTCCCACAATACACTGAATTTATGGAGAAAAATATCTCCCGCGACCTGCTGAAAATTAAGACTTCAATGATCTCCCGAGGCAATTCTGGGCAAAGCATCAATGTCAACCTAAATCTACCCATTTGAGGAATGTTGCAGCAAGTGCCCttgatcatttttttctgaTGGGGAACTGGAATACCTTGCTGGAGAAACATTTTGGCATTTTGTCAGCATCAATATGTCCTGTTACCTTGAATTCTCTGACAACTGCCTCTGTGGTAtcctgagagagaaacagacaatAGTTTGTGGGGGTTTTTTCTCTCGTTTTCATCAGGAGGGATCAAACCTTGTATAAACTTgtatagtacaaaaaaaactcCCTACAGTGACCAAAAAACGTGAATCAGCTAATCACAAAGCACCACTGAAAAGCGACACATCTAATGCGAACATCTATTAATTACTGTCCAAATAGCACTCACTGTTTCTTTTTGCTTCTTTTCGCTGGACACTTAATCTGCACAGCTGAGGATGTCAGGACATTTGCGGTTACTTGTAAGTGACACAATCACATACCGGGATAGAGATGCTGGATGAACACTTTATACCATTTTCAGTGGTGTGGTGCGCTTTTCTGGATGGATAAATCTCTTGTTTGGACCTATATGTACACTTCCTCTTCTCTGCTTCTCCCTTCTAGCAGCCAGGCTATTCAATACCGCAATGCAAACATCTTCACAACTGACTCTGGAAATCTTTTCGAGTCCTGCTATGTGTTATGTCTCCTTATATAACGAAGACTACTAATAATCTGAGTATATACACGAAGAAAAAGTATATGTGTTATGCTTCAAGCAAGATTGTAAATACATGTATGCActtttgttgatgttgttttattGGAACTTTTCAGGacatttgtttgtaattaattttatttttatattagtaaaaatGACATGCAATTCTTGAAAAGGGAGTGGAAAATGCACGATGAACTTGAAATCAAAACACAAGATGCTGTGACTGAGGAATTTACGTTGCACATGTGTTGTAATCCAAAAAATGCTCCCAAAATTACTGAAAAATCTGCAGCGGGTTTATTTTAGGAcatgtttgtattgttttagaATGTTACCATTTGGCGAGCTGacctcttttaaaaaatgtgatatgCAGGCTTTGAGACAGGAAGACGGCTTCCAGAAAGCGTTTGCGTTTAGTAGCATTTAGTTCTAACACGTAGTACTGTAAGGTACGATTGCTCTTTTTCTAGAACAATCTGTCCGTCGAAACATTGCACACAGCTTTCAAGATGATCTTTTGGTCATTCTGCAAATGAAGAATTGCTgctgtaaaatcatttttgctttttttgccaTGTGGTATACCCAGGGAAAAACCAGGCCAACTCTTGGTTGCGgatgtttttttcagaagagCTGCTTTAGAGCAAGAGATCAATGAAGTTATTAGCTGCTCAAGAGTCAACAATCCAGTATTCGATATTGCTTAGACAAAGAGTGTTATATGTTCTATTTCCTTTTGAGTCATTGGAGAGGTTTAGAGAAAGGAAATGTTCACCATCAAGAACCTTTCTTCTAATGGTACACAGACATCTAGCATAGAGAGTTGGGTAATACCTGTTTCTAATAGCAATAGTATTGTTCTGTGCCTAGTGAGTGATATTTCCTATCTAATCCTTGAATATTCTATATATTTCCAGTGGTCGTCTGTCAAATCTCTATTGTGTACAAATCATCATTTTACTTGTCTATGTCATATGTGTCGATATGGGTTTCTGTATGTGGAGTCTCAGCTGAAAGATGTCGAGAGACACCCGGATGATATCATATTTCACACACTTACGTTTAATTACCTTCATTTCTCTTTAAGCGaaagactttttgtttttatgcggAATGCATGCCTTAACGAATAAGAAGCATTTGATGGCTCTATCTcagataagaaaataaaaaagataagcAGGTAAAGTGCAAATTCATTTTCCgagatatttaaaaagacatttgttgaTTCTGTTTTGGGTTTTGTATATGAAGACGTTTCGGCTTTCGCAGCAATGAGAGTTAATGCAGTTTGCTTCCCAGTTTTGCAGCGTAATTATTATTTTCGCCTCATCAGAAATGCAAGTTATGTGTGCTAAACCATGTtcaaatgattataataaatgcattcatatattAACTACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50512 lncRNA downstream 37408 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 124171 8013686 ~ 8013937 (-) True G34276
TU50497 lncRNA downstream 124557 8013347 ~ 8013551 (-) True G34275
TU50482 lncRNA downstream 200737 7936511 ~ 7937371 (-) True G34265
TU50476 lncRNA downstream 276279 7861475 ~ 7861829 (-) True G34260
TU50532 lncRNA upstream 6097 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50548 lncRNA upstream 42688 8197468 ~ 8260129 (-) True G34314
TU50544 lncRNA upstream 44450 8199230 ~ 8200082 (-) True G34310
TU50543 lncRNA upstream 62183 8216963 ~ 8218476 (-) True G34309
TU50549 lncRNA upstream 101079 8255859 ~ 8262919 (-) True G34315
XM_043238300.1 mRNA downstream 1501 8131517 ~ 8136607 (-) False pdzd3b
XM_043238301.1 mRNA downstream 1504 8131517 ~ 8136604 (-) True pdzd3b
XM_043240863.1 mRNA downstream 6936 8129121 ~ 8131172 (-) True atp5l
XM_043238139.1 mRNA downstream 24011 8108715 ~ 8114097 (-) True ftr83
XM_043238140.1 mRNA downstream 24011 8109575 ~ 8114097 (-) False ftr83
XM_043238368.1 mRNA upstream 6502 8161282 ~ 8164026 (-) True si:ch211-117m20.4
XM_043238367.1 mRNA upstream 6694 8161474 ~ 8164026 (-) False si:ch211-117m20.4
XM_043240280.1 mRNA upstream 9391 8164171 ~ 8170627 (-) False LOC122345805
XM_043240281.1 mRNA upstream 9391 8164171 ~ 8170592 (-) False LOC122345805
XM_043240279.1 mRNA upstream 9391 8164171 ~ 8170590 (-) False LOC122345805
TU50440 other downstream 416645 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 740955 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1015644 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1016259 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1194905 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 257102 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 274920 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 519769 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 774690 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1060728 9215508 ~ 9220507 (-) False vamp5

Expression Profile