RNA id: XM_043238161.1


Basic Information

Item Value
RNA id XM_043238161.1
length 6539
RNA type mRNA
GC content 0.40
exon number 5
gene id tacr1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9248321 ~ 9275552 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAGCGAGAGCTAAAATTGGTTTCGCGATGAGGAAAAGTGAAGGAGCACAGCGTTGCGATCTGTTGCCTTGTCTTCACAGGGCTCATTCCTTCCTTGTCGCTGAATACAACTGAGGGCTACGAACTCTTTTTGCGTCATGAAATTcgataataatatttttttcctcaaaaggAGACATGGTCGACTGAACAATAATCCAACatccagctaaaaaaaaaactttgtatttTATCACAGTTAACCCAGTTTTCCCTAATAGTAATGGATTCGCTCATCACTTCCACTGACTTCCAAAGTAACTGGACATTGAACTCCACCGCACAGAATGAAACCGAGATATACTGGAACCAGTTTGTGCAACCGGTTTGGAGAATAGTGCTCTGGGCAGTGGCTTACAGCACGATTGTCATTGTCTCCGTGGTGGGCAATATCACGGTGATATGGATCATTTTGGCGCACAAACGCATGAGAACCGTGACGAACTATTTCCTCGTCAACCTGGCATTCGCTGAGGCGTCGATGTCCGCGTTCAACACCGTTATAAACTTTGTCTACTCCGTGCACAATGAATGGTATTTCGGACTCTATTACTGCCGGTTCCACAACTTCTTCCCTATCGCCGCCGTCTTCGCTTCCATATATTCGATGACCGCGATTGCACTCGACAGATATATGGCCATCATTCATCCCCTGCAGCAGAGGATGTCTGCAACTCAGACGAAGGTGGTCATCGGGGTCATCTGGGTGTTGGCTCTTCTGCTGGCCTTCCCCCAATACTACTACTCAGACACGGACCAGCTGCCCGGCAGGGTGGTCTGCTACATCGACTGGCCCGAGTACACCGTCCTCGACTTCAAAACGATgtattttgtgtgtgtggcggTGCTGATTTACTTCCTCCCTCTCCTGGTGATGGGCTGTGCTTACCTGGTGGTGGGTTTGACTCTGTGGGCCAGTGAGATTCCAGGAGATTCATCCGACCGTTATCAAGAGCAGCTGACCGCCAAACGCAAGGTGGTGAAGATGATGATTGTGGTGGTATGTACGTTCGCTGTTTGCTGGCTTCCCTATCACGTCTATTTCCTGATTTACCAGTTCTACCCGCACCTCTTTGAGCATCCCTTCATTCAGCAGGTCTATCTGACTATCATGTGGCTGGCAATGAGCTCCACTATGTACAATCCCATTATCTACTGCTGCCTCAATGACAGGTTCCGTGCCGGATTTAAGCAAGCATTCCGCTGCTGTCCGTGCGTCCCTGAGGGATCCTACGAGGGCCTAGAGCTCAAGTCCACCCGGTACCTTCAGACCCAGACCAGTTTGTACAGAGCCAGTCGAATGGAGACCACCGTGTCCTGCGTGATGCAGCCGTGTGAAGATGGCCAGAAGGTCACGTTTGGGAGCATCACAGGGGCCTCTGGGAGGCCAGCTGTTCACAGCCCCTCCAGGGAGCTCACCTCCAACGGCTCATCCTCTCGCAGCATCTCCAAGACCGTGTCGGAGACCTCCAGCTTTTACTCCAGTAATAACCTACAAGAATGAGAGCACAAAAGCACAAGAGTCAAGGAGACCGAATGCcactatttttgtggaaattattTGTCGAATCCTCTTCAGTTCTCCCCCCAGTGTAAATTTCAAATGGCCCTTCATCTTTCATTCTTGTCACAATCTATTCATGAGGTTCATAATTATGATTAGAGGAAcgttttcattgattttttgGGAAATGATTTCTTACCAAAGTGATGTAAATGACATATTGCTTTGTTCTGGCTTCAGTGAAAGCCTGATTGATTGATCCTGCAATCACTGaggacattttaaaagtttacattAAAGGACATGTGATGCAGTGGAACACTGTATATATTGAATATGATCACTTATATTGGTCTGGTGTCTTGTGAACAACAACCCGACTATAAAAGGAATAGGAATTTCAATGAAAGTACCCCTCTTAATCCCCCGAGTCTCAAAAGATACCTGAGCATATGAAGTTTGTTCAGTGCTTTATCTGCAGGTGGGAGATTACTGCAGACCTCAAAGAATATTTTTCTGTAAGCACCTTGAAAATCTCTAAACTGGCTGAGACTGAACAAAAACAGAGGGCAGGGATTACACTATTGAAAGTGCCTCTGTGGCTTCACAGTCAGTTAGAGCAATGATCCAGTCTGTGAAAGGAAAATGAACAATGTCAGTTGCCAATATCGACACATTGTAGCTACACAGGCAAATACAAAAGAacaatattaaattacttttcaaGGTGTGCCTGGAAACACAAATGCGTGGTGGTGAAAGCTCTGAATGCCTGACCGGAATTTTTGTGCTCTGAAAAATAGATCTGGAGGAAAAAATGTGATTCACAGAGAATTCttgtacactcttaaaaataaaggtgcgaTGCCATTGAAGAACAGTTCAGTCAAAGGtactttaaagaaccatctctttcttacctttttataatctgaagaaacTTCGCCACAAAGaaacttttgtgaaacagaaaggtccttcagatgttaaaggttctttatggaactaTTTTTAGACAAAAGGGTTCTTTTATAGAatcatgaagcacctttatttataaGAGTGTACTAGTTATTTTTCGTTTTTTCTCTCCCTTacttattttttccccaaaattgACCCTTTGCTATGCTACGCCCCTTTGTTACTGTTGCCAATCTGTTTACTGTGGCTTACAGTACATCCCCTTTGAATGAACTTGAGATGAACGGCATGATTATTAGTGAAAAGTGCCCAAAAAGTGGTAAGAATCGATTAGATCTTATTTTATATAGGCGGAAATAAAATCTTCTTATCTgggattttgttttaaattatgcacTCAGTAATGTGATGAAAAGCTGCAGACTGCAAGAGCTGAAAAGCAatagaataaatgaaaacaccGAAATAGAActgttaatattaacataaactATACTTTGAACAGTGAAACGGTGACATGAATTGACAATGACATTGAttctcaagaaaaaaaagagagatggagtaTAATAATTACCAATACAACTTAATAACgattgtaaaattatttcatataaaatctaTCATACTATCCACCCTGTCTGCCCTAAGTAGTATTGAAAATTACtactattttttaattactactactactactactaaagccaaaaattacatttctatgAGTAAACTCAAAATTAGGATTCACATAACTTTTGACCAAACCCTTATGCTTTCGAATCGATCTCGCTGTACTTTGCTGTCATGCACTGATCATTCTGCGCTTATATGTAAGAATATCCCAGACCATGAGGTTGGGGAATGTGGAGTGTGGGATAGCTGACCGATGCCTACAGGTACCAGTTGAGATTTGAGGGGCGAATTTCGAGCTGTGGCTCCGTATGATGCATTCTCAAATTTTTGCACCTCTGGAGGGACACAACAGTTGCTGACTGCTGAGGTATGATTAGTCATGAGGCGGAGCTTAGCTAAGTGCCAATCTCTAGTTCTTCTGTTGTACAAGCATTCACGTGCCCACATTCCTCTCACACTGGACAAGGCCAGAGTAAAATTAGCCCTTCAGGCACCTCCCTCGATACAGTCACTGCAATATGATACTGAGGTACACAGGATTATAGGACAAAAGGGGAGGTTGAAGTGACCACCTGCTGCTGTTTATGACTGAGATTGTGATAGTGGTGTCCATTTTCCAAAATGGAGGTCCGTGCTGTTCTTAAGTATGACTTATAACAGATCGGCTCGTCACATGATTGTGGGTCTGAGCTTTTATTGCTCACACAGCGGCAGCAGACATTTTATGCGGCAATATGTTCCGAATATTTCAGACGGTAAATGACTCTGATCTGAATGTGCCTGACTGGTTGGCAGGTGCTGACAGCTCATTCCAGGAATAAATGAGCCACACTCTGTTCCTGATCTTTTTCAGAAATACAGAACAGCATGTGATGCTTATGCTGAATTGCAttagatatatacacactaaaCATTTGgaataatttagcttttttaatgtttttgaaagaagtaatttatgctcaccaaatcagcatttacATTGAAGTCTAGAGTACTGGCTGCTAAAATGAttctttgccatcacagaagtaaaaactgtaataatatttcacaatattaaggTACAAACTGTATCAAACACTTACCGCCTTGGACGCATAAGagacttaaaaacattaaaatatcagTATCTTTTCAGAATTATGACCAGTAGTATATCCTACAGTATACATCTGCACCCAAAAGGGAAAATTTGGTTCTTATTTATGgtcatgtaattaaaaatgaaatgttttatgataTGTAGAATGcaaattttgaagaatgttttagAGGTCTATACGTAAAAGCCCCAATGCCAGAAGCCactttttaagaatattttatttcatcatcaGTGGATAAAAAGCGAGACATACGGATTTGGAACCACGtaagtgtgagtaaatgatgacagaagttttatttttgactagACCATCCTTTTAAGTTGAACATAAGGAGCGTCAGTTGAGAAAGGCATATAGGTGAtcatatacaaaaaaagcacatcTGCCAGTTTGGGTTTTGTGGCACCTCTGTGGACCATATTTATCTATGTGATTGTGAGCACAGGAGGATTTGCTCTCATCAGCTCTATCTCTCTATAATCAGAGTAATTACCCAAGAGAAGAGAACACAGAGGGGAGGACAACAGCTGTGTATGAAAGCattcacacacagactcatCCACCCTCCAGCATTCCTCACATCCCTCCCAAGGCCATTCTGCATGGCTGCTTAATTTCACTCAAAGTTATTATTCGTGTTTGTACGTAAACATAgcgagtgtgagtgagagtgtgcgTGTTTAAACATACTTCTACATGAGTCCAGCTGGTATAGTTCATCAGTTATTCAGAAAGAAAGATGTGCTTTGATTTCCATCCAGCACAGGAGGCCTGGACTGCTGCTTCCACTGACTTGAAATGTCCTTTAAGACTCTGATCACAAGAATTCTTGGCAATGCTTTCATTAGCTTTCAAGGGGTCATgacatcattttttaaagtcatttttctctttcttgcaTCAATCATAGTCGCAATTTAGATCTTACGACCTTTTTCCGACATTTTGAATTTATCAAGCCATTTTGCTGCTGCACCTTTCTGCGTGTGCTTTCTCTGTTTTTTGCAAAAAGAGCACCAGCGCTTACTTGTGTGTTGGGAATTTGTTGTTTAATAGAGTTGGCGCTGCTCCATCTTTCAGAAACACTCTCTTTGCAAAGCCTGCATTACAATGTGTCAGGTTCACAAAACAACATCTGCGCACTTATATGTAAGGTCAGGCTGAAATGATTGGGACCTTGGTAAAACAGAACTTTAGTTCCTTTAGGAGGTCGTGCAGAGTCTCAGATGCCACCCCACATCTTTTATCATGTGTTTTATGCCTTTtatcattgatttttttatgcctTTATATTTACTTTCTACATCAAACTTTTTCATTAGATTAATTTGACCCCTTAACCAGACATTATGATATTACGAAATGTTGTACAGATCATTATTTTATGTCTATGTACGTAATGAaactttgatttatattttttcttatgtatattcatatttgGAAGTACATAAAAAATGATCAGTTATGAATATAATTGTTAATGACTTATTAATGAAAATTTAACCTTATGTTGCCTGTTAATGAGCTAACTTGTCTGTTAATATTTCTTATATGCTTTTGGCAGTGGTTCCcaaatatgtgtttgtattcaattataaaagagtttattatgttttatgacTGAACGTACATCAACAAAATGATATGGCTACCAGTGGCCAAGTTGTTACTAAAATAATCCacttttgcttttaatgttGTGCTGGCTTGCTCTCATTTATGTATGCTTTTGTATGCATATGCTTCTGTATGCTTTGTCTAAAATATCTGTATTCAGGCCTGTGTGTGCTCTAAAGGGAAAAGTTTGAAGATCTCCATTCGGTATTAGAAGCCGTGAAGCAAATCATGCAGGTTCAGCTAGTTAAAACAGATCACATTAATCAATTGTGACGCACGAAATGAGCCATTGAAGTTAAtaagcagagagaaagacaaaagtCTGTGTCTCACAGTAAAGAGTAGAGCTAGCTATGTCTTGTTGAAATTCCACTCAGTTTATCTGGTTAGATGTTGAGCTGTGCCCCGTCTGAGAAGCAGGGTTGATCTTTGTTGCTCCTACAAACGCTGTCAAAAAGAGTTACTCTAAGTCAATCTGTTTTGCCGCCCTCTTTTCTTAAGAAGGTTTTGGAGACTTGGGCCAAATCTCTGAAGAATTCATTGTTATGTATTCAGTGCTGTAGTTGACTTTGTGTTCTGCATTAACacttaaaagtattcatttcaaactagattttaaagtttaattgaatattatatttgtattatttgtattctaTATGCTTAtagaattattcattatttaggGATGCACAGTAtgtcttat

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04222 TACR1; tachykinin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51125 lncRNA downstream 280 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 187507 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 257008 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 257298 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 314182 8933911 ~ 8934139 (-) True G34583
TU51339 lncRNA upstream 488521 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 490716 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 502081 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 1005857 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 1062195 10337747 ~ 10341167 (-) True G35047
XM_043238354.1 mRNA downstream 15492 9227044 ~ 9232829 (-) False ncaph
XM_043238353.1 mRNA downstream 15492 9227044 ~ 9232829 (-) True ncaph
XM_043240428.1 mRNA downstream 21723 9222554 ~ 9226598 (-) True vamp8
XM_043240615.1 mRNA downstream 27793 9215498 ~ 9220528 (-) True vamp5
XM_043240765.1 mRNA downstream 33315 9185548 ~ 9215006 (-) True dnah10
XM_043240184.1 mRNA upstream 41102 9316654 ~ 9319605 (-) False ogfod2
XM_043240181.1 mRNA upstream 41102 9316654 ~ 9319492 (-) False ogfod2
XM_043240182.1 mRNA upstream 41102 9316654 ~ 9319365 (-) False ogfod2
XM_043240180.1 mRNA upstream 41102 9316654 ~ 9319364 (-) True ogfod2
XM_043240251.1 mRNA upstream 96462 9372014 ~ 9381877 (-) True adam28
TU51091 other downstream 27814 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 318268 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 570603 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 816746 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 833515 8411882 ~ 8414806 (-) True G34372
TU51236 other upstream 62276 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1049563 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1185656 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1592812 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1648375 10923927 ~ 10926163 (-) True G35384

Expression Profile