RNA id: XM_043238166.1


Basic Information

Item Value
RNA id XM_043238166.1
length 3002
RNA type mRNA
GC content 0.51
exon number 10
gene id galnt9
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4487841 ~ 4557844 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCAGCGCGTGAAAAGCGGGATGAGAGGGAGGGAGCATGCGGGGAGCGCGAGAGAAGAACGCTGCCATGCAAAGCGTCGCCTGACGGCGTCTTTTTTCCGCTTCCACCTGCGTCCGTCGCGCGCGGATCGTGGATTTCATCTGAAATCGCGTCCCACTTCGATGCGCGAGCGCGACGCGTCTTTGCTTTTGAGTCCCGCGAAGGATGCCGCGCGCGGAGGATCGCTGCCTGACATGcgctgacatttaaaaatgagccTTCTGAACTGTGCACAGCTCGTGCTCCTCGACTCCTGAGTGCACGGCGTGATTAAAcgcgtgctttttttttttaaatcggaGCGTAATCTGCTCCGACACATTTCTAAACGTTTGCTATGGGGGTCAGCGCAGGAACCCGAGGCGGCGGGATTTGATTGCAATCTCAGCGAACGCGTTTTCGCTTATGTATCGCGTGTGCATCGTCGTTTGTGCCCGCTGATCAGCTGTTAGGCTTGAGAAACTGCGGCTCGCGCGGGTTGTCGTGCGCGGTGCTGAAAGGACAGCTCCCTCCACGGCGGATCGCATGGATCAATATTAGGGGTCTGACAGTGTCGCTCTCGGGCTTTAATGGCTGTGGCACGCAAGATCAAAACTCTGCTGACGGTCAACATTCTGGTGTTCGTCGGGATCATCTTGTTCTCCGTCTACTGCAGGATCCAGGACCGATCCGAAGAGCTCGTGCAGATCGGGAGGCTCTCGGATCAGAGACTGCGAGGCAGGAATGCCAAAGTTACGAACTCCATGGACAGACAGTCCATTCTCAAAAGGCTCGAGCGACTAGAAGATGTGGTCTATAACCAGTTAAATGGTCTAGCCAAGCCCATGGGTCTGGTGGAGGGTCCTGGAGGTCTGGGACAGGGCGGTGCGGCGGCCACGCTGGGAGAAGACAGCCGAGAGAGCGAGGGAAGGTACGAGGAGTACGGCTACAACGCCCAGCTGAGTGACCGCATCTCCCTGGACAGGAACATTCCGGACTACAGACCCAAAAAGTGTAAGCAGCTGACCTACCCTGATGACCTTCCTCAGATCTCTGTCGTCTTCATCTTTGTGAATGAAGCTCTGTCTGTGATCCTGCGGTCTGTACACAGCGTGGTCAACCATACCCCGGCACACCTGCTCAAAGAAATCATACTGGTGGACGACAACAGTGACAGTGTGGAGCTGAAGTTCAATCTGGATCATTACGTGAACAAGCGATATCCCGGCCTGGTGAAGATCGTGAGGAACAGTAAGCGAGAGGGACTCATACGGGCCAGGATTCACGGCTGGAACGCTGCCACCGCTCCTGTTGTGGGCTTCTTTGACGCCCACGTGGAGTTCAACACAGGCTGGACACCTGCGATGATCGGCTGCTCCTTTGTGGTGGATCGCGAGTATTTTGGGGAAATCGGACTGCTCGACCCCGGCATGGAGGTTTACGGAGGAGAAAACATCGAACTCGGCATGAGGGTGTGGCAGTGCGGAGGCAGCATGGAGGTTCTCCCGTGTGCTCGAGTGGCTCACATCGAACGCACAAAGAAACCGTACAACAACGACATCGACTACTACGCCAAGCGGAACGCTCTGCGGGCAGCAGAAGTTTGGATGGATGAGTTTAAGTCCCACGTTTACATGGCCTGGAACATCCCCATGAATAACCCGGGAGTGGATTTTGGAGACGTGTCAGAGCGAGTAGCACTGAGGAAGAAAATGAACTGCAGGAACTTTCGCTGGTACCTTGAGCATGTCTATCCCGAGATGAGGATTTACAATAACACCATCACTTATGGAGAGGTGCGAAACAGTAAAGCCAGCGGATACTGCCTTGATCAGGGGTCAGAGGAGGACGACAGGGCTATTCTCTACCCATGTCACGGCATGTCATCACAGCTGGCGAGGTACACCACCGAGGGCTTATTGCAGTTAGGACCCCTAGGGTCGACCACGTTTCTGCCTGACACAAAATGCCTGGTGGATGATGGAAGAGGAAGGACTCCGAGCTTGAAAAAATGCGATGCCATCACCAGGTCCTCCCAGAGGCTCTGGGATTTTACTCAGaatggACCTATTATAAGTCGAGACACAGGACGTTGTTTGGAGGTTGAAATGTCAAAAGATGCGAACTTTGGCCTGCGGCTGGTCGTCCAGCGCTGCTCGGGGCAGAAGTGGATGATTCGAAACTGGATAAAACACCCCAGACACTGAGGAACGTCCATAGCTGAAGAATCACCTCCCCGAGCTGGAGAGCAGCCATAGACACAAACCCCTGAGACAGATGAGAAGAACCCTCTTTCGGGGTGAAACGCTTTCAATATAGACGTCTGAAGGTGATATATTGTCTTTGGACGCATTTACTGTTGAGTGAGCAGATGAAGCAGAAGTCCTCTGTACAGGCTCCCAGTTTCCCGCAGCGGACTCGCGTTTCCCGAGTGGGTTCTGATGAGCCGTCTCGGTGAAATATCAAGAGAAATATTCAAAAGAGTTGCggataaacagagagagaggaagcgaAAAGTTGCAAACCCCTCTGAGCAAAGTCTCGAGTTTTACTTCTTATCGATTGCCATATCAACACTCGTTTCTTCAGGCTGTGAATTGCTTTGGATAACCCGAATATCAACTTTAAACGTTCAGTGGGTATCCCAAGTGCTACACAAcaacaagggaaaaaaaagaaagtagtgTAGACTTTAATCTGACACAATAGTTtcagctctttttctttctttggtttACAGACTTAATTGCTAATGCACAACAAAACCATGTGTTCAGTCAAGAACTCATGTGCCTTTCTCCATCTTTATGCCATCAGACCAGGGAATGTTCCTCCCTAAGCATgtacaaatatttgattttaaattaattaaaatatgaatataatgttAAGGTCTTATTGTAGAAACACGTTGTAAAATACTCAAAACATGATAATCCAGGAAGATCGAAACAATAAAAActagttttcttttcttttgta

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48755 lncRNA downstream 389468 3607467 ~ 4098373 (-) True G33109
XR_006250997.1 lncRNA downstream 436369 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA downstream 436372 4050915 ~ 4051469 (-) True LOC122345411
XR_006250999.1 lncRNA downstream 518877 3967856 ~ 3968964 (-) True LOC122345413
TU48808 lncRNA downstream 583295 3898591 ~ 3904546 (-) True G33140
TU49028 lncRNA upstream 302155 4859999 ~ 4902402 (-) True G33300
TU49044 lncRNA upstream 356037 4913881 ~ 4915751 (-) True G33310
TU49071 lncRNA upstream 467101 5024945 ~ 5027815 (-) True G33330
TU49073 lncRNA upstream 474719 5032563 ~ 5033954 (-) True G33332
TU49075 lncRNA upstream 476267 5034111 ~ 5053903 (-) True G33333
XM_043238426.1 mRNA downstream 25424 4456819 ~ 4462417 (-) False atad1a
XM_043238425.1 mRNA downstream 25424 4456819 ~ 4462417 (-) True atad1a
XM_043240871.1 mRNA downstream 117363 4350227 ~ 4370478 (-) True LOC122346182
XM_043239521.1 mRNA downstream 168106 4287799 ~ 4319735 (-) True LOC122345409
XM_043240860.1 mRNA downstream 295018 4144856 ~ 4192823 (-) False LOC122346168
XM_043239098.1 mRNA upstream 369483 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043240688.1 mRNA upstream 391240 4949084 ~ 5001056 (-) True zdhhc8b
XM_043240689.1 mRNA upstream 450242 5008086 ~ 5013941 (-) True rnf215
XM_043240589.1 mRNA upstream 611868 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240048.1 mRNA upstream 793602 5351446 ~ 5380269 (-) True aacs
TU48820 other downstream 294760 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 294760 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 294760 4144927 ~ 4193081 (-) False LOC122346168
TU48805 other downstream 593366 3885425 ~ 3894475 (-) False piwil2
TU48850 other upstream 64646 4622490 ~ 4623058 (-) True G33175
XR_006251120.1 other upstream 873420 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 1398455 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 2266327 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 2365586 6923430 ~ 6943192 (-) True usp20

Expression Profile