RNA id: XM_043238178.1


Basic Information

Item Value
RNA id XM_043238178.1
length 1584
RNA type mRNA
GC content 0.49
exon number 9
gene id ccdc15
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23098840 ~ 23104975 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTTGTGCGACTCTGTTAGCGTCTTGACAACGGATCTTTAATCCTGACGGTTACAGCTATGAAAATATTTACGCTATTTGTATGAGGACAGTAACGGCGTTATGATCCGatgtactgttttgtttttgctcgaATAATCGGTGCCTTGCTAGGTATTAAGGTCTGAATATCAGTGACTCACAAAATGCCATAAAGGGTAGTTATACGTTAAGTTAGCCATCCATAACTGAAAGGTTTGACGCGAAATGAATCGAGCAAAAACTACCAAAGAAAGGGTTTGCTCTTCGATAACACAAAAGAAGgtcttaaaagaaaacaaaaggatCATCTTTGGAAGCAGGAGAAAGGCCAGAGATGTAAGAGTGTTGGCAGAGAGGAACCCGGCTGTGGCTCCTGTGGGTGTTTGGGTGGAGAGCGGCGATGAGAGTCAGGAGCATCCCGCGGTCCGTGCTCTGCTCACAGAAGAGCTTCTGGAGGAGACCAGacgagagaaagaggagagtcTGCGCCGATTTCGGGATGCAGTTCGTGAACGTGTGTCGCAGCAGGCTCGTCTGGCCAAACAACGGCAGCTGCTGAAATCATACCAGACCGTTGAATGCGACAGCAAAGTACTGCAACAAACCAGCAGAGCGGCCTATCGTCTTACACCCCAAACCAATTTATTCCCTTCCTGGACACACGGGGAGCGAGCAGTCTGCAGTCCCGGCTCTCGCTGTGTCAGCGCTCTGGAGACGCAGGCTGTTTCTTCACATCACCATACGCATAATGTCAGTAAAGTCAGGAAGCAGGTGAGACACAGACTGGCTGCTCGTCAGACAGCGCAAGAGGGAGATGAACTACCTGGAGGGAGATGGAAAAGATCCACAGCCAGAGAAAAAGCCGAATCACACGCTTGGAAAGATCAGAAGGATTATACTGAAAGTGCAAATGATGGAGGAGAGGAAAACGAGCAGGAAGTTGAAGCGGAAGACGAGATGCTGTTGGGGCAGCATGATCAACCTCTTCATCTGCATCGCCGCAGAAGCAAGACTGTAACTTTTCAGGATGATATGGTGTGTGAGCCAGATCCCACAACCGACTACAGAGCTTCCCAAGTTCTCTGGCCTCATGAGAATCAGGAAGAGCTGAAGAGGCAGAGACAGTCTCAGTTCCTCATGTATCGACGCCACTTCATGGACATTGAGAGAGAGCAGGCGAAGGAACACCAAAGGCACAGGAAACATCTGAAGAGAACTGCAAGGATCAAGAATGAAAAAGAACAACTTAGGAAATCTGAGGAAAAGAAGATGGAGAGGCAGCGACAGcaagaggaagaaagaaaagacatgGCTGAGAGGGAGTATTTGATTTTGGAGCGATTGAGGcttgatgaggaggaggaggaggcagcGGAGAAGGTAGAGAGACGAGAGAAAACAAAGAGGAACAAAGAAAGCAAACGTTGCGTGATGGTCGTGTGACAGGTACATTGAGGCCATGCAGGCTCAAATGAAAGAGAAGCTGGAGAAGGATAAAGTAGAGCTGCCTCCTCTGTGCTGCTGTGGAGACACTTTCTGGGACAGTCATCCAGAAACCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 62659 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 223692 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 307076 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 307076 22791710 ~ 22793053 (-) False G38634
TU57041 lncRNA downstream 1058910 22038380 ~ 22041219 (-) False LOC122344815
TU57383 lncRNA upstream 22244 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 240614 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 252599 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 497261 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 561866 23666841 ~ 23669869 (-) True G38892
XM_043239956.1 mRNA downstream 2870 23086295 ~ 23097259 (-) True slc37a2
XM_043238568.1 mRNA downstream 15204 23078556 ~ 23084925 (-) False pde9ab
XM_043238567.1 mRNA downstream 15204 23078556 ~ 23084925 (-) True pde9ab
XM_043238412.1 mRNA downstream 23735 23070110 ~ 23076394 (-) True oafb
XM_043240855.1 mRNA downstream 33557 23057206 ~ 23066572 (-) False pou2f3
XM_043238281.1 mRNA upstream 954 23105929 ~ 23119144 (-) True hepacamb
XM_043240775.1 mRNA upstream 22237 23127212 ~ 23132008 (-) True nrgna
XM_043239346.1 mRNA upstream 289189 23394164 ~ 23411152 (-) True LOC122345314
XM_043239345.1 mRNA upstream 289189 23394164 ~ 23411151 (-) False LOC122345314
XM_043239344.1 mRNA upstream 292455 23397430 ~ 23411152 (-) False LOC122345314
XR_006251119.1 other downstream 1060095 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1140245 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1216107 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1216107 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1274024 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 497269 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 646905 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 782328 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1092730 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1483053 24588028 ~ 24594116 (-) False anapc2

Expression Profile