RNA id: XM_043238184.1


Basic Information

Item Value
RNA id XM_043238184.1
length 5450
RNA type mRNA
GC content 0.43
exon number 2
gene id ajm1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32049652 ~ 32067214 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAACTGACTCatatgtttctatttttactcCCCTTCCAAAAGCATCCACTGCATTATTTGTGCAGTTTGTAAAAAGCAGAGAAAGGACATCGTTTCAAAAGGGAACCTTAACCTAAACGAATTTAATGGGGAAAATTAGAAGAGTCTCATTAAGATGACACGCACACATCCACCTGATATACTAGTATCAACAGTGTATCAAGATGTTAAAGTGACTTCCCTCTCAGACCACTCCAAAGCCTGTCATCCCTCAAAACAATGTGATTCCCCATCCATCAGCAAACTGGAGAACACTCgtaaaagcaaaagcaaaaagagGCACTGCCGTAGCTTTGACACTGAGTCTATGGACAAACCCCGATATCATACAATAGCAATGGAGTACCCATACCGAAGGGCTGAAAGGTACGCGGCCAATCCAGAGGTTGCCTGGAATGCCTTAGGTCGCCAACAAGGGCATGGACTCCACAGGTTTTCTTCCCCAGACATATTTAGCTACCGACTCACCTCCCAGCAAATGACTGCTGAGATGCCTGGTGAAATTGCTGTGACAGAACAAAAGAGGAGGACTAGATCTAGAAGTGCCTCACGGGTTCAGACCAGCCTAACTCCTGTGTCTTTTGATGCTTCTCCTCCAGTGGCAAGGAGGGGCCGGGAAGCTCAAAGGGCCCATCGAAACACTCAGCCAAGGCCGGAAGTTTCCCCAAGAAGAGAGTCTTCCTATGCCGCCACGCGGGCACACCTGAACGAAGTACATCCCATCAAACTGCAGCCACAGAGGAGCGACACAAGCAGGTATTCCCCTGTATATGTGCCTGAAGGCTTTGACGAAGGAAGGCCAGAGAAACCTGCCACTAGTCCTCATGTTCGGTGCCGGGTGGATATCAAACCAGATGAGTTGGCCGTGCAGCAAGGAGGCCGAAAGGCAGCTACACCCCATGTGGACATTCCTTGGCAGAAGTATCCCAGCAGTGGCAGTCGGAGTTTGACAGTGCCTCGCCATTTCTCCACCTCGAGGACACCGACTCCCACTGACTCCTTCACTGGGGAGTACAGGCAGGCGTACCAGTATTCCCAAAGTATGCCAAATAGCTACATGCAGCCTATGGAGATCCCTTTGCAAAAGGCGGTCTCACCACGGGAGCCAAGGGAACACTATGGACGGGAACGAAGGGCTCATTCAAGCCCCAACGTGCCAACTAAATTCTTCTATGCAGAGGACTTGGGGAAGTATGGATCTTCAGCTCCATCAAGGACTTATTATCAAGATGACCGATACAGCATTCCTAGCCAACCCTACTCACCTAAAGTACAATATGTGCAAGACCCAAGGACTCACATTGTTCATACTGTACCTTCCCGGCAATATTTCACAGAAATCGACCCCTACCATTACCCTGCACAGCCTGTGTACCCTAAACCCTATGCTGCAAGTGAGCCAGGGGCTTATATAATTCAGACACCTCCAGCAAGGACTTTCTATGGAGATGACCCAAGGACATACCAGATTCAAACAGCCCCTCCTCGGATCTTCTACATGGCCGACCCCTACACTCCACAAATGGAGCATCATATTCCTGCAAGGGCGTATTACACCGAGGGAAGACGACATGCTCGTGTGGTGCAGCCGCAATCAGAGGACTGGTATGGCTCAGAAGTCTCCGGCTACTCTAGCCATTACCCTTCCTCGTATGTCTCACAGGTTACTCCCACGAGAGTCAGACAAGAGCCAAAGCTCACAACTTGGTATGCCAACCCATGCATGGAGCCAGCAAGAACAGTAACAGACCCAAGACCGTACTCAAGATCTTGGGATAACATCCTCGATACCCACGTAGAACGGGAACAGCCCGTACCTCGAGGGAAAAGTGATGAGAATCTTCTTTGTCAGGGGATACAAACTTCAAGTGAACGACCAAAACCTGTGGTTGTCAACCTTTCCAGTTCTCCAAGGCGTTATGCTGCACTGTCCTTATCCGAAAACTCTTTGATTGACAAAAGTCCAACGGAGCCCAGGAGCTCTTCAAGTAAACTCTGGTTCGTCACACCTGAGATTACCATCACAGACAACGATATCAAACCAAGCAATCTTAGTAAATCAGAAGAGCGCTCTGCAAGTTGGGATGTGCTGGATTCAAAAAGTGCCCCAAATCAAGAAGCCCCTCAACGTGAAGCGAAATCCCGCTCTGGAGAATCTACCAAAGAGAAAGCACACAGCAGCACATCTCTACAGCAAAGTTTAGAGCAACTTGATGAGCTTCTCGCAGACCTTGTTATCGATTACAAACCTCCAGCCCGGAGGACAAGTGAAAACTTGCTTGATCAACTCAAAAAGCTCATCGATGAAGAAGAAGCTGTATCTTCAGCAAGAAAGGATTCGATGACAGGATCTGAAAGTGGCATTCCCCTTGACAAACAGCCCACTTCAATAAAAATAGATCCTGACACACTAAGAGACACTGACGGGAGTTGTGACGGCCTGAGAAGTACAGAAGAGTGTTCCCCTGACCAGAGCCCCGATGAGGATGACACTATGATGTGTTCAAACAATAAATGCCGTCGGACTGAGACCTTGTTTAACGCCTGCCTCTACTTTAAGTCCTGCCACAGCTGCTATACCTATTACTGCTCTCGCAACTGTCGCCGCGAAGACTGGGACATCCACAAGGAGAGCTGCCTCTATGGGCGAATCGGAAGTGTGTGTCGCCACGTTATTAAGCACTGTCGAGAAACCACAGAGGTACATAAAGCTTTCTCCCGTATAGCCAAAGTGGGATACCTATCTCGGGGCAGGGGAGTCTTGTTTTTGGGCTTTCCAAATCCAGGTTCATCCACAAATTTCCTTCAGTTTGGACTAGAAAGTCTACTTATGTCACCAACGTACTTATCTCTCCGTGAGCTGGAGAGCTTCAAAGATAACCTTGGGGAATATTGCAAGGAGCTCCAAGAGGCCGGAAAGGAATACAACCCTAATGAATGTTTTCTCTTGAATGTATCCATTGCTGTTGGTGATCAAGTGCCTGACGGACCGTCGCCAAGGGTCCAAGCCCCAACCGTCAGGAAATTTGCCAAGATTGCTCTTGCCTCGTACAGCCCAGAAAAGAAGGTCCATCGGAAGGAAAGTGATATGGAGACGTTGATCCTGACCCCACCGCCAGGTATGGCTGACATTGACAAGGAAGGCGAGGAGGGAAGGAAAGCCCGGGAGATCTGCTTCATCAACATTCAGCGGGAGTTAAGGATACGTGGGGTGTTTCTTCGCCACGAATATCCCAATGTCTACCAAAAGCTCTGTGAGTTTGTTGAGAGCAACAGGAGGTTCACGCCCACTACTATTTATCCAATTGATAAAAGGACCGGCAAGCAGTTCATGTGCATGATAATGGCAGCCTCCGAGCCACGAACTTTGGACTGGGTAGCCAACCCACATCTCTTAGATGACATTATATAAACAAGTGCaccttttatatattaaagcatAGATCTCACTATAGTACTTATCTAAATATACCAAGCTTATTTGTTATACATGTTTGTAGATATGTATTttgttactggaaaaaaaaatgtattcatgtctGCAAGGTCAGTATTATTCAAAGTGGAAATATTGCCCATCAGATGTTGAATATGAGTAATTCACACAGTTTATCCATCAACTTGATATCTAGTCCTAGAATTCGTTCATTTACGCTTAACTGGCAATTACTGCCGTTGCCATTTTCTTTGTAGCAATTCTCTTTTGATATTCTTTTATTGTTCATgaagagaacgagagagaaaaaacaatctTGATTTATTTTGGCAAACTACAGAATTATGTACTTATGTCAGAGCTGAATATTTTTtcctatgcaaaaaaaaaaaaaaaaaaaaaaagaccaacatTGTCCcgcaaaaatgttgaaaaagttttaatactatatttctgtttatcataaaaaaaatgtgtatttttattggtATGTTAAAACAGGcattatactatactatattatactatattattatattatgttatattatattatattataaatatagtaaaaaaaaaacttaatgcagagaaaaacagtacatataAAGGGCCGTGGATTATCCACGGTCTATTAAATGTACTTTGAGGAACggctttaattaaaaagagagCTGCTTAGAATTAAGCAACACCTAGAGGTTTGTGCTCCAACCTGGTAAACTCATTTTAGTAAATGGTTTACGTAATTTAGGTTTTGATTTAATGAAGTAATTGGTGCTTTTATGTATGTTTAGTAGAATTACTTGAGCAATAATGAACTTGAAGACaaaatttggaaaatattgGTATCAGTGATGCGCCGCACATTAGGTGTTGGCCCGTACTGTTCCATCAGAAACACTGTGAAATGAGATATCTCTTATATGCGTGTCATTGATAGAGTTTCCTTGTGATCACCTATTAGACTTGGAAATATTTTAGTAGTTAAGGTTACGAGGGATGTGATATCAGATGCGGCTGTAGATTCGTCTAGGAAAGTGGAATCAGAATTGCTGTAGGTTATTAAGCTTGGAAAAAATAgtttgtgcgcgtgtgtgtggttttgttttcGCTTAAATTGCAGGCGTTCAACAGTTTCACAATACTAAACATGCGGTAGCGAAATACAGCACTGATTCTCGAGTTACTGCACGAAATGGTCCACAATTAGATCTGGCAGTAGCATAAGTAAGCCTGTTAATGGCGAGGGGCAACagaaaaactattaataaatgcaaaaacaaacacttttctGTCAACAAACTGTTTAAAACCATCCTGTATTATCAGTTCAACCTTATAGCGTAATGCTGGATTTGCTATTCGTAAGTATTTGACCTAACAGTGCATATTTTCATCTGTCAGTGTTGACATGAAAAAGAATACATTGTTATAGCGGAGGGGGACTTATTTTGTCCCAGTGCTCAAGAATCAGTGAGTCGATACCTGTATACCTTTGTCATGTACTTGCATTTCGCTCCTATTTGGTGTCCAAAGCGGGTTTGTTTTCCTTGAATGTCCCAGACGGTTATACTTTGCTGTTTTACTCGATGAATTCATGTCACAGCACAACCCTTCTGTGTGGACTCGCTACCTAGCACACGTCCAGGTGTTTTTTGGCCCGGCAGAGTGTACATATACAGTGGTAAACGGAAAGAAATGACTGCATGTGATTCTATTTTTTCTAtctcattaacattaatataattaaccTGCCtgaatatttgatatttgaaaatatgctgTATATGAGGGATAAAGTATATAGTAATATACGAAAATATATAGTAGGAGTGATATTTTTCAAGATCAACGTGTCGACCATCGCTGTTATGCTGAAAACAACCCGAGACAAAGACACGGTCTCAAAGaggagaagacaaaaaaaagtaaaagctaaagcttaaaataaaaaaaagtgtgtcttTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60812 lncRNA downstream 71186 31977714 ~ 31978466 (-) True G41065
TU60811 lncRNA downstream 72601 31975936 ~ 31977051 (-) True G41064
TU60785 lncRNA downstream 144865 31723742 ~ 31904787 (-) True G41047
TU60963 lncRNA upstream 323055 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 375547 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 381210 32444282 ~ 32445281 (-) True G41191
TU61018 lncRNA upstream 414190 32477262 ~ 32477840 (-) True G41216
TU61019 lncRNA upstream 417283 32480355 ~ 32480713 (-) True G41217
XM_043238302.1 mRNA downstream 33184 31979887 ~ 32016468 (-) True pbx3a
XM_043238304.1 mRNA downstream 33187 31979887 ~ 32016465 (-) False pbx3a
XM_043239754.1 mRNA downstream 88804 31943855 ~ 31960848 (-) True mvb12ba
XM_043239755.1 mRNA downstream 88806 31943855 ~ 31960846 (-) False mvb12ba
XM_043239756.1 mRNA downstream 93492 31943855 ~ 31956160 (-) False mvb12ba
XM_043239589.1 mRNA upstream 19488 32082560 ~ 32103786 (-) False rabl6a
XM_043239591.1 mRNA upstream 19488 32082560 ~ 32103786 (-) True rabl6a
XM_043239627.1 mRNA upstream 50824 32113896 ~ 32174064 (-) True tnca
XM_043239628.1 mRNA upstream 50824 32113896 ~ 32173416 (-) False tnca
XM_043239629.1 mRNA upstream 50824 32113896 ~ 32173391 (-) False tnca
TU60769 other downstream 326746 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 337915 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1223294 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 1223294 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 1256933 30789633 ~ 30792719 (-) True G40713
XR_006251008.1 other upstream 59212 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 151204 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 151220 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 151221 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 151223 32214295 ~ 32293782 (-) False LOC122346090

Expression Profile