RNA id: XM_043238198.1


Basic Information

Item Value
RNA id XM_043238198.1
length 5150
RNA type mRNA
GC content 0.43
exon number 2
gene id flrt1a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26673097 ~ 26719746 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCATTCGGACTAACAAGGGAAAGTGATGCTCAGAGAGGAGGACAGAGGACTCggaaaagatgcattaaagGGCGATGAAGTTCTGTGAAGCGCTTTCTCGTCGCAGCGTTATGTACGCACGTACGACTCATTTACTGTAGTGTTTTATTGCTACGTAGAACGGGGTGGATTTTATTGcaaagggggggaaaaaacgaTATCGGATGGTCGctgaaaggaagagagaaagggGGTGAACGATTTGAATGATGACTTATAGGCTACAGCGGACCGTCACTTATTTCTGAATTACATCTCGAATAGCGTGGAACTTCGCAGTCCTGAggaaataaccaaaaaaaaagcgtttATTCGGTAAAGgagagatggatggagagaCAGGCAAAGGAAGGCTTCTCTGACGAAAAGGGTGAAAGAAAACACACCAAGTCCAAATGGACTTCTGAATCATCTTCTCTAAAGAGTCATTAAATTGGTCAATTGTGCTATAAACGGCAAGTGGAGGATAGGAGAGCCTGCTGGTTGCATGATGGCTCCTGAAGGTATAGGAGAGCTTCGAGATTTGCTCTTCTTCCTGCTCCTGTGCCTCACATTATTGGCTGAACTCTTGGAAATGACTGCAGCTTCTTCACAGGGACTGGATGGCGAAGGTGACATAGTGTGCCCATCTGTGTGTCGCTGTGATGAGGACTTTATTTACTGCAACGACCGTGGATTGAGTGCAATCCCACCTCTACCACCATCTGCAACTGTACTTTATCTTCAAAACAATCACATTGACAATGCAGGGCTTCCTAGGTCCTTGGAACATCACATGACTGTGCGTGTTATATATCTCTATGATAATGAGCTTGATGACTTTCCCATGCATTTGCCACCTTCATTAAGAGAGCTTCACCTCCAGGACAACAATATTAGAGTGTTGCCAAGGACTGCACTTGCTAGACTTCCACTACTTGAAAAGTTGCATCTGGACGACAACTCTGTTTCCACAGTGAGTATTGAGGACCAGGCCTTTGCGGACAACCCTCGATTACGTCTCCTCTTCCTTTCCAGAAACCACCTTTCCAGCATCCCATCTGGTCTTCCTGCCTCACTTGAAGAGCTCCGTTTAGACGACAACCGAATCTCTACTATTCCCACTCATGCCTTCCGAGGTTTGTCCTCTTTACGTCGCCTGGTCTTGGATGGAAATCTGTTAGCTAATCAGCGCATAGCTGATGATACCTTCTCACGCTTGTCAAACTTAACAGAACTCTCCCTGGTCCGTAATTCACTTCAAACACCGCCACTTAACTTGCCCAGTGCCCACCTACAAAGACTCTCTCTTCAGGACAATAACCTTATACACATGCCTCGGGGCTCACTTGATGGAATGCGCAGACTGCAACGGCTAGATCTCTCTGGAAACAATCTGACTACCCTTCCCAGAGGATTGTTCAGGGACTTGGAAAGCCTGGGGCAGCTGCTTGTGCGGGGAAACCCATGGCATTGTGGCTGCAACTTGCGTTGGCTTCACGACTGGCTGGAAGCAAAGGGGAATACAATTACAGTGAGAGGCTTTATCTGCCAGACACCAGAACGACTCCGAGACATGGCGCTCAGAGACCTCACAAATCAGATGGATGAATGTGAGTTGGCTGCGGCTGGTGGTGGCGGAGTAGGTGCAGGGATTGCCGTTGGTGGTAACAGAGTGAGTGGAGGAGCAGCTGGAGTCCTTTCTACCACTCTTTCTCCCCCTCAGGGTTCCCTTTTTACACTCAGGTCCAAGCGACCAGGCCTCGGTCTCCCAGAAACAGGATTGGACTACACATTAAGCAGCAGCGGTGTGGGCAAAAACCTGGCCCTGAATGTGAAACCCCTATCACATGACAGCATCCGTGTTACTTGGAGCGTAGCGCAAACATCTTCTTCTTTTCGATTAAGCTGGCTTCGTCTAGGAACCAGCTCCGCGATGGGGTCCATCACAGAAACCTTGGTTAGAGGCGACCGGCGGGAGTATCTTCTCACTTCCCTGCAGCCTGCTTCCAGCTACATCATCTGCATGGTGCCTCTAGTATCTAACGGCGGAAGCAGGAGTAGTTTGCCTGGGGGGGACACAGAATCAAATGAGGTTCCAGTTTGTGCCAGAACAGAAACGTCTGATCCTAGCCACACTGATGATGATGGTAAAGATGAGAGCTCTGATCAGTTGACTTCTCTTCCTCTTGCAGGAATTATTGGGGGTGCTACGGCAATAGTTTCCCTTGCTCTTATCATTGCCATTTTCTGCTGGTATGGACACCGTGCAGGACATTTCACATCACGAGACCATTACAGCCATAGTAGCTCTCGCAAGAGCAAACACTATGATGACTACATTGAGTCAGGCACAAAGAAAGACAACACTATCCTAGAGATCAGAGGTCCAGGATTTCAGATGACACCAATGGCAACAAGGCAGCCCCTTCAGCCGAAACCAGTGAGAGAGGATTACATTATACACACCATCTTCCCCTCGAATGGCACAGGTCTATACAAGCCCTCCCAAAACATGACCAACTCTGGCTATGGTACCAATCGTGGCTATAGAGAAGGAGGCATTCCAGATATAGATTACTCCTACACATGATAGCTTTGATTTAGAAACCATAATTAGGAGTCATGTACTGCATAGATACACAGTTTTTAATCAACATGGGCTCTGCAGAATCCCTTTGTGCCTTCTGGTCTCCATTACAATGTAGCCTGCTGTTCATGagactataaaacttttaattggCCCAGATGCTTATAGGAAGCATTATAAATGTGGTGCCAGGAGGAGATGATGCCATTTCAGGTGGTGATACCAAATGCTATTTTCACCTCCCGGTGTAATGATCAGTGTCCCTGACATTGCTGTTTTATCTCTGGCTGGTGCACTGAGGTGGATTCAAGGGCAGCCCACACCGCATTCAGCTCACAGACTGTTCATAGAGCTCAGTGCATATATGGGAGAGAGGAAGTCTTCTCATCTGAAATAACCAACCtgctgtacattttaatatttgtctcCTATGGGATGAATCTCCCTGAATCAAGGATTTGAACCAGGATTGACAGGAATCCTGCACTGACAATGCAACCTCTTTGCTCAAAGGAAACTGGAAATGTGTTGTTTAAGTGATCCTTCTGGAAAATGCATGGGTTCACATgcagagttgttgttttttggagAACAAGCTGCAGAACATGACTACTATTCCTAACTAAAACAGAGTGTCTGGACCAAGCAGAGACATGGCCCTCAAAAACTACAGCAAGGTTTGAAATGCCTCAAAAACttaattcatttgaattctTATACACTTGAAAGCTGCCTGATTCTACTACGATAACGTCTAACAAGCGTTTTGATGACTGTTCTAGTTTCAGACTGATGTAAAGTTGAGAGGATGAATGAAATGGCTTCATGTGTCTTGAGGAACTttcgatttttaaaaattgcaacTGAACCCTGGTGTGTTGATAGATACAAACAAAGAAAGTTAGATATTGGACATTGTCATAACTATGTTCCCTAGCTGTTTGATTTCCCCCATTTGtttcactatattttttaaCTCATAAAGCTCTGCTAATAGTTATAATGTTTCtcaatttaattgtttttttgtcacttttccTACAAAATGCTTATTTTCAGTAGATTGTCCCCTATAATGCACAGAGACTAAAACAACGTTCTGTTAAGGTGGCTCATGGTTTCTAGGTTGCTCAGCCACATTTTTAGCACAAAATTACATTCTATAAATCACTTATAGATAAATCACCTTCGGATTTCACTGTAGATAAAGAAATGGCCTCGCTGCTAACCACAGCGGTTGTACTGCTATGATTCTTagggagaagagagagagtgttagAGGGGAAACCAGGAATTTGAACCATAACACTGTGGACCATCACTGTGGAAGATAGAGAGTGCATCAGAATGTTGTATAATTTTGTAAGGCggaaacatttttgatttgaaGCCACTTTTTTCTCAGCATTTTGTCAATGTCTTCAACCTATTCATTTAAACCAACAGCAGAACAGAATGCTAATTAAGGATTTATCAGAGAATTTACACAGGTAGTCAGAAAGAAAAGTTGCGTTCCTTTTTACAAAAGAGATCCCCTGAGACTTCATACCGTTTCTGTTCTGCTCtgctgtatttatgtatttgaggACTTGTGGAGAATTTAAGAGAGCTTACACTGCCTTGTATTTTATGTACTATTTGGCATTGTAGTGTAAGTGTCAAAATCAGGAAAACGCAAagatggatagagagagagagagagagagagagagagagagagagagagagatggaagtAGAATGTTCTAAACTGAGAAAGAGTGAgtgattacacacacaaaacatggaTTGATATTAAAGCAGAGGCCTAATGGAAATGAATCCTGTGGTGTTGAACTGTGCATGAAATGTTTGTCATCTTCTTGCTGTCTGCTGTTGTGTTGGCACTTTGTCTTACGCCTTTCCTTCTAAGCAAAGAACTACTCCAAACTTCTATTTCAGAGATGGAAATTAATGAAGACTTCATGGCATTTCAATACACACTCGTTTTACAGCACTTCAGTCTCACAGTATGTCATTTTTGTAAACCAAAAACAGAATTTATGGGATAGCTCACCGACAATGGAAATTctgtaatttactcaccctcaagctgCTCCAGACCTGTACaaatttctttatttggttgaacacaaaagatcaTAGTTTGAAGCATATGAGTAACCAAACAGTTAAACGGCGAACTGTCATTGGGGACCATAAACCGTTgaaaataccttcttttgtttttagcaaaagaaagaacttcttggaacagatttggaacaagatttggaacaacttaagtgtgagtaaatgataatataatgcttttaaattgaCCTGTGGAGAAGCCTTTTATTTTTAGGCCAGAAAGGCAACTGTAAAACTGAGGAAATGTTGAAGGATGCACAGGACATGAAGCAGGATGTACCACTGCTTTAAGAACATAGCcccattttttgtatttttatttattggttgatttattgattgttgGTATGTTTTATGTTGTCCAAGTGCAACAATCAATTCactcaaaaagtaaaaatgtcacCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250952.1 lncRNA downstream 299275 26372619 ~ 26373822 (-) True LOC122344941
TU58531 lncRNA downstream 519394 26153465 ~ 26153703 (-) True G39585
TU58525 lncRNA downstream 554014 26118474 ~ 26119083 (-) True G39579
TU58520 lncRNA downstream 889506 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 944627 25728237 ~ 25728470 (-) True G39572
TU58747 lncRNA upstream 156844 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 156844 26876590 ~ 26883175 (-) False G39712
TU58799 lncRNA upstream 362255 27082001 ~ 27084786 (-) True G39738
TU58800 lncRNA upstream 380069 27099815 ~ 27107385 (-) True LOC122345426
XR_006250928.1 lncRNA upstream 396221 27115967 ~ 27146962 (-) True LOC122344810
XM_043238542.1 mRNA downstream 25562 26639154 ~ 26647535 (-) True stip1
XM_043238541.1 mRNA downstream 35232 26626193 ~ 26637865 (-) True im:7154036
XM_043238546.1 mRNA downstream 48081 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA downstream 48089 26615142 ~ 26625008 (-) True kat5b
XM_043238547.1 mRNA downstream 48092 26615142 ~ 26625005 (-) False kat5b
XM_043239284.1 mRNA upstream 50185 26769931 ~ 26789018 (-) False rps6ka4
XM_043239283.1 mRNA upstream 50185 26769931 ~ 26789018 (-) False rps6ka4
XM_043239282.1 mRNA upstream 50185 26769931 ~ 26789018 (-) True rps6ka4
XM_043239285.1 mRNA upstream 50185 26769931 ~ 26786829 (-) False rps6ka4
XM_043238940.1 mRNA upstream 76509 26796255 ~ 26800046 (-) True rom1a
unassigned_transcript_1081 other downstream 561695 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 563527 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 571688 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 581101 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 583309 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 663175 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1169377 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1536082 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2740839 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2897253 29616999 ~ 29655061 (-) False eng

Expression Profile