RNA id: XM_043238199.1


Basic Information

Item Value
RNA id XM_043238199.1
length 2765
RNA type mRNA
GC content 0.51
exon number 18
gene id top3b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1733099 ~ 1745696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGAAGTTAACATGTCTAAAGAAGCGGCTGCACCACACACCGGTCCTGTTGATGTTTGTGATAGATAAGTAAAAGCAGCAGCGATGAGGACTGTGTTTATGGTGGCTGAGAAGCCCTCTCTGGCTCAGTCCATTGCCAAAATCCTTTCTAAAGGCAGCTGTTCAACGCGGAAAGGTCTGAATGGAGCGTGTTCAGTCCATGAGTACACAGGAAGCTTCATGGGACAAAATGTGAGGTTCAAGATGACGTCGGTATGTGGACATGTCATGAGTTTGGACTTCATAGGAAAGTATAACAACTGGGATAAAGTTGATCCAGCTGAGTTGTTCAGTAAAGCTCCGACTGAGAAGAAAGAAGCAAACCCCAAACTAAATATGGTCAAATTCCTTCAGGTTGAAGCAAAAGGTATCGACTATGTTGTCCTGTGGTTGGATTGTGATAAAGAAGGAGAGAACATATGTTTTGAGGTGTTGGATGCCATTCAGCCGGTGATGAATAAGTCTTACGGTAATGATCGTACTGTGTATCGcgcaaagttcagctccatcACAGACACGGATATCTGTAACGCCATGAACCGACTCGGAGAACCCAACAGGAACGAGGCTCTGTCAGTAGATGCTCGTCAGGAACTGGATCTCAGGATCGGCTGTGCTTTCACACGTTTCCAGACTAAATACTTCCAGGGGAAATATGGGAATTTGGACTCCTCCTTGATCTCGTTCGGTCCCTGTCAGACTCCCACACTGGGATTCTGTGTGGAACGGCACGACAAGATCCAGTCCTTCAAAGCTGAAGCATACTGGGTTATACAGGCAAAGGTTTTTAAAGGCAAGGACAGTCCGCTCACCTTGGACTGGGACCGCGTGCGAGTGTTTGACCGAGATGTTGGTCAAATGTTTGTTAACATGGCAAAGACTGCTAAGGAGGCTAAAGTTGACTCGGTCTCTAAGAAAGAGAAAGCCAAGCAGAGACCCCTCGCGTTGAATACAGTGGAGATGTTAAGAGTGGCCAGCTCTGCTTTGGGAATGGGTCCCCAGCACACTATGCAGATAGCAGAGCGTCTTTACACACAGGGTTATATCAGCTACCCTCGCACAGAGACCACACATTACCCTGAAAACTTTGACCTCAAGGGCACCCTCAAACAGCAGGCCAACAGCTCCTTCTGGGGTGAAACGGTAAAAGCCCTGCTCTCTGAGGGCATTAACAGGCCAAGAAAGGGAGTGGATGCAGGAGACCACCCGCCAATCACACCCATGAGAGCCGCCTCTGAGAGCGAGCTGGGCAGCGATGGTTGGCGTTTGTATGATTACATCACACGGCACTTCATCGCCACCGTCAGCCCCGACTGCAAATACCTACAGACCACCATTTCCTTCAGCATCGCCACAGAGAGCTTCACGTGCAGCGGGAAGACTCTCATCTCTACCGGTTACACCGAGGTGATGCCCTGGCAGGGTATTGCACAGGAAGAGGCCTTGCcggtgtgtgagagaggagacACGTTTACAGTGGATGAGATCAAACTACTGGAGAAACAGACCAATCCCCCAGACTACCTGACTGAGGCCGAGCTCATCACACTCATGGAGAAACACGGCATCGGTACGGACGCCAGCATCCCTGTCCACATTAACAACATCTGCCAGAGGAACTACGTGACCGTTGAAAGTGGCCGCAGGCTCAAACCCACAAACCTGGGGATCGTTCTGGTTCACGGTTACTATAAAATTGATGCAGATTTGGTGCTGCCTACGATCCGCAGTGCTGTGGAAAAGCAGCTAAACCTGATAGCTTTGGGAAAGGCAAACTTCCAGCAGGTCTTGCAGCACACTCTGGACATCTTCAAGAGGAAGTTTCACTACTTTGTGGACTCCATTGCAGGCATGGATGAGCTGATGGAAGTGTCCTTTTCCCCCATCGCTGCTACTGGGAAACCTCTCTCACGCTGTGGCAAATGCCATCGCTTCATGAAGTACATCCAGGCCAAACCCAGTCGCCTGCACTGCTCTCATTGTGACGAGACCTACAGTTTGCCTCAGAATGGAGCCATTAAACTGTACAAGGAGCTCAAGTGTCCTCTGGATGAGTTTGAGCTGGTGCTGTGGACCTCGGGGTCTCGTGGCAAAAGCTACCCTGTGTGTCCATACTGCTTCAGCAACCCTCCCTTCAGAGACATGAAGAAAGGGATGGGCTGTAATGAGTGCACCCACCCTTCCTGTCAGCACTCTCTCAACTCTCTCGGCATCGGTCAGTGTGTTGAATGTGAGACAGGCGTCCTGGTTTTCGATCCCACCTCGGGTCCAAAGTGGCGCATGGCTTGCAACAAATGCAACGTGGTGGTGCATTTCTTCGAGCACGCTCATAAAGTGCAGGTGTCCCAGGAAAGCTGTGATTCCTGCGAAGCCTCGCTGGTCATAGTGGACTTCAACAAGACACGCTCGCCGCTGCCTGACGGGGAAACGCAGCACACcggctgtgtgttttgtgacgCCGCGTTCCAGGATCTGGTGGAGCTGAAACACGCGACCATGCGCCATCCCATGCATCGGGCCGGAGGAGCCCGGAGAGGGAGAGGGAAGGGGAGAGGCAGGAGGCCTGTGGGGAGAGGGAATCCTAAAAAACCTAAAGACAAAATGGCAGCCCTGGCAGCATACTTTGTATAGATTGTTCATTTTTCTTGCAGCAGAGAATTAAAGACAGCAGAAAAAGGCTTCGAATTCAAGCTGAAAAGATGGCAATAAACTTTTAGTTTAATAGA

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47992 lncRNA downstream 66193 1666698 ~ 1666906 (-) True G32572
TU47888 lncRNA downstream 125352 1606425 ~ 1607747 (-) True G32486
TU47861 lncRNA downstream 165950 1541226 ~ 1567149 (-) True G32462
TU47864 lncRNA downstream 193731 1537398 ~ 1539368 (-) True G32463
TU47832 lncRNA downstream 219787 1513045 ~ 1513312 (-) True G32440
TU48000 lncRNA upstream 13948 1759644 ~ 1759857 (-) True G32579
TU48002 lncRNA upstream 16782 1762478 ~ 1762829 (-) True G32581
TU48004 lncRNA upstream 17579 1763275 ~ 1763648 (-) True G32583
TU48007 lncRNA upstream 20902 1766598 ~ 1766880 (-) True G32586
TU48023 lncRNA upstream 48808 1794504 ~ 1796557 (-) True G32596
XM_043240215.1 mRNA downstream 962 1721233 ~ 1732137 (-) True ppm1f
XM_043240297.1 mRNA downstream 15198 1696432 ~ 1717901 (-) True mapk1
XM_043240298.1 mRNA downstream 38813 1673024 ~ 1694286 (-) False ypel1
XM_043240299.1 mRNA downstream 39305 1673024 ~ 1693794 (-) True ypel1
XM_043240301.1 mRNA downstream 43102 1673024 ~ 1689997 (-) False ypel1
XM_043240861.1 mRNA upstream 23740 1769436 ~ 1771792 (-) True sdf2l1
XM_043239640.1 mRNA upstream 34469 1780165 ~ 1785389 (-) True ube2l3b
XM_043238324.1 mRNA upstream 148084 1893780 ~ 1898590 (-) True LOC122344761
XM_043238158.1 mRNA upstream 274400 2020096 ~ 2022922 (-) True LOC122344636
XM_043238500.1 mRNA upstream 307009 2052705 ~ 2058733 (-) True LOC122344882
TU47988 other downstream 39125 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 378685 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 396912 1322296 ~ 1336187 (-) False castor1
XR_006251110.1 other downstream 396915 1312606 ~ 1336184 (-) False castor1
TU48139 other upstream 220941 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 220941 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 274412 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 750808 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 834852 2580548 ~ 2585426 (-) False snrnp27

Expression Profile