RNA id: XM_043238212.1


Basic Information

Item Value
RNA id XM_043238212.1
length 2872
RNA type mRNA
GC content 0.50
exon number 16
gene id radx
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11519575 ~ 11526037 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTAGGTGGCGCTGCGGTTAAAGTTTACTGTTCAGTTGCTCGGGAAGAAGAAACACGAACTCGCCGCGCGCTTGGAGTTTGTTTACATTCTTTTCAGAGATGGCAGGCCCGGCGGATCGCAGCGACAGCGGGTTTGGTTCTGCTCTCCAGGCGGTGTTTGAGCAGCTGCGGTCCGCGCACACGCTCTCCCTGACCCTCACTAGCCCGCTGTGCCTGGCTGTCATCGCTCTGGACCGCTACCTGAGCGCACAGCATCCCGTCCCTGAGAGCTACAGTTATGACCTGACGGTCACGGACGGCCGGTGGCGGATAAAGTGTCAGCTGGCGGACAGTCTGAGCCGGTGGGTGAGGACGGGCTCACTGCGCTGCGGAGCCGGGGTCCTGGTGTCCCAGCTATCGATGGTCCACGACGAGACGAGGCTGAGTCACAGCTACATCAGGATAGACAGTATCTGCAGCGTCGTGGTGCTCCCAGAGAGGTTTCTGTCCATTCAAGACGTGGGGAGTATCCCGGAGTGGTGTCAGGACCACGTGACCCGGTCCGATGGACCCCTGCAGCTGagcagaaaatattatttaccaCTGTGGATAAACGACGATCCTTATGGAAGCGTTTGGGTTCCTTATAGCCCACCGCCAGATGTGGTCATTGATGTGTCTAGAATCACACTTCTGGCGGATCTGGAAGCATTCTTTCACAGCTCCAGACGGCCTTTGCCACTGCTGGTCCGAATTCTGCACAGGTCCAGGATACGCTACTATGGCAAACCAGGGCAAAACATTGACTTCCCATTTCAGGTGTACTGTGAGGTTGCTGATCAAAGTGGCGTCATGTCCATGGTTGTATGGAATGATCTTTGTCCTGAATGGTTCAACAGACTGACAGTCGGCTCAGCTCTATATCTACAGCAGTACACGTTGAAACACAGTTATCAGAACCGATCAAGACCACATATCTCCTCACTCTCTCTTAAGACTTTCCACACCGTTGAGATCTGTTTAAATCCTCGAAGTCCTGCTTCTGTAGTGACAGTGATTCCTCCAAAAAGTGTTCAGCCTCAGTGGGATCTGCCTGATGTTCCATACAACTTTGCCACAAGGTCAGAGGTGGACTCGATGAACAAAAACCAAGCCTGTGACATCATTGGTCTAGTGACATACGTGGGCCGGGTTGAGAGAATTAGGAGCAAGGAAAAGACAggaccTGAAAAGTTCTGGGGCTATCGTTGGGTACATGCAGTTGATGGGACAACAGACTCACCATTTATCCTGGAGATCTTCTCCTCATCCCAGCCAGAGATCTTCAACAACATCTGCCCTATGACGTATCTGGTGTGCACTCAGATGAGAGTGTGTAAGACAGGCTGCTCTGTGTACCTGACCAGTAGCACAGAAACACAGCTCTTTATCACAGGTTGTCATAAAAAGCAGCCCTATGTCAATGAGCCGAAAGTTAAAGCATTCATTCAGTGGACTAAGACACTGAAGGACAGTGTCATGCTGGGGAGGACTTCGGTTGGAGGACATTACTGCTACCCTCCTGCACCACCCACATTCACACCAACCACCAACGATGAGTCGATTACAGCAGTGGCTGATCTGAGAGGGGAACTGGAGAGTCTGCAGTACAGAGAACATAGGAGACTGGCTCTACAGGGTCATGTGTCTGCTGTACAGTACCACACATGGCCACCACAACCTGAAACACCACACAGTGAACAACAGCAGGAGAGTGTCTCCGTACGAGGAGTCAATGACACTGGAGCTGCCTCTTCTCCCTCCACAATGGATGAGATGGCTCTgatacagagagagatggatTCAACTTCACCGGATTCTGATATTACAGTCTCACCCAAACGCAGGAGAGTGCAGACAGGCTCAAGAGTTCATCGGCAGTATTTCACCAGATCCAAAATGCAGTCCAACAGGCAGGTGGGCCTTTCCTCTCATGAACAGGAGGAAGAAGAGCAACAGGATGAAGGGGAGATGGAGGACTCTGAGGTTGAAAACGAACATGCATCAGCTGTAGGAAAAGagaTTGACCAAACATCCCGAGTCCCAGACGTACAGCAAGCTGCCAGCCACCCTGCTGTATTATGGGAGAGCAAAGTCTGGCCTTCAGTGAAGCAGCAAGTGACCGATCACTTTCGTTGTGGTAGACTCGATCAGGAAAGCATTTCTGAAAAATTCCATTTCGACGACCGAGAAGTTCTACTACATCGCCTGAATCTGAGCCCAGCCAGATGGACGCCCGAGCTCaccgcacaaacacacacacacacacctgtggcCTGCACTGGCTACTTCACGCTCACGATTCTGGGGCTGAATCAAACGGCTGCAGTAGATGTCCATTTTGTGCCTGTCCTCTCCTCCGATGACCCCAGAGCGGCTGGAGTGCCACACACTCAGCATGACAACTCCCTGCTGTCCTGCATATCAACAGGACGACTGTGTGTTCAGCCAGATGGTAGCTGCCCGgcaccagggttgttGATGTGCTCTGCTTCTCAGTTGGAGTCGGAGCACGTGGTGTGTATTGTTGATCTCTGTTTGCTCGGAGAACACAGGGTAGAAATGATCTGCTCCAAACTGTACAGGACAGCCGACATCTGCCACCCCGATGGCACTCAAGGAGACGCCACACGTCATGAGTAATAATCAAGCACAGAAAAAAGTGGAATCAGATGATAGATGTCGGTGCTTTCCAAtatgagtttttgttttagtggACTGGAAAACTGATTTTATGAGTTTAAATGGGCCAGAaagatatttttacttttgtattaataatatgtgCTTCTAAccatttgtttgtaaaatttCAGATaactttttagaaaaataaacttgaacgcaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 189209 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 189209 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 206745 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 269569 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 298684 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 144920 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 166513 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 170154 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 171911 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 171911 11697948 ~ 11699511 (-) False G35599
XM_043240838.1 mRNA downstream 52453 11463863 ~ 11467122 (-) False hmgn7
XM_043239803.1 mRNA downstream 56814 11442622 ~ 11462761 (-) True brwd3
XM_043239804.1 mRNA downstream 56816 11442622 ~ 11462759 (-) False brwd3
XM_043239809.1 mRNA downstream 77154 11439109 ~ 11442421 (-) True chmp1b
XM_043239806.1 mRNA downstream 83303 11431860 ~ 11436272 (-) True cnga2b
XM_043238929.1 mRNA upstream 1025 11527062 ~ 11573963 (-) False npas2
XM_043238930.1 mRNA upstream 1025 11527062 ~ 11555047 (-) True npas2
XM_043240918.1 mRNA upstream 54797 11580834 ~ 11582813 (-) True vma21
XM_043238595.1 mRNA upstream 57918 11583955 ~ 11599842 (-) True mtnr1c
XM_043239836.1 mRNA upstream 93073 11619110 ~ 11621440 (-) True tnfsf10l4
TU52323 other downstream 52453 11419955 ~ 11467122 (-) False hmgn7
TU52322 other downstream 52453 11463831 ~ 11467122 (-) True hmgn7
TU52116 other downstream 593412 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 645511 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 1057866 10461208 ~ 10461709 (-) True G35122
TU52344 other upstream 57743 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 275277 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 639373 12165410 ~ 12169327 (-) False sh2d1aa
TU52745 other upstream 791766 12317803 ~ 12319685 (-) True G35825
TU52956 other upstream 975877 12501914 ~ 12505958 (-) True G35936

Expression Profile