RNA id: XM_043238215.1


Basic Information

Item Value
RNA id XM_043238215.1
length 2204
RNA type mRNA
GC content 0.43
exon number 9
gene id vsig10
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1506685 ~ 1512189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAACGAAAGCAAGTAAACAGGTTGAAGATGGACATGAGCGAAACGTGACACAAAATACACAGTATTCGAAGCGGGTTTAGAACGGGCCTTATTTTAACTGAATACCttctacttatttatttaatttatagaaaAGAGTTTGATGCGTTTGCCGGGAAAAACGAAGAAAGCGAGCGATTTTACCAAGGAAATATTTTATCCCATAATCTGATGGGATATCCTTACAGTCCTGAAATGATAACAtctgtaatatttctgcatcTGCTTCTTCTGTCACATCATACAGTGTCAGAGGAGCAGGTGCAGCGCTATGTTACTGGAGAGAAAGGAGGCAATACTACACTACAGTGTCTTGACCAGCCAGTCAATGCGTCTTCACTTCTTTATCGTTGGAAGAAATATGGGGCCGTTGTTGCAACCCAAAACCCCTTGAAGCCATCAGAGCATCTTTCCATTTCAAACAATGGCTCTCTTTGGATCACTGACCTCCAGTTTATAGATGAAGGCCGGTACGAATGTGAATCCCAAACAAAGGATGGCAGCTCATGGCAAACTCTCTCAAACACCCAGCTTCGAGTCGCCGaggGTCCAACTAGCGTCTCACTGGCCATACAGCCGGCAGCTCTACTACCGAATGGAACATTATATGTCAAAAAAGGCGCAGATGTGCATTTTAACTGCTCCAGTGAGTCTGTACCCTCACAAAACCTGGCATGGACTGTTAAAGATTTGGCGCTGGACAGTGATGACAGGGCGACTGGGAACAAATCATTTCTTGAGTTCTCAATAAATAACATCCAACCAAGCGATCAAGGGACGTACACGTGTACATCCCAGAATGCACTCTCCAAGACAACTGTGAACAAGAGCCAGGAGCTGCTAGTTTACTATGCTCCAGAGAGGCACCCAGAGTGCAGCTGGAAGATAGTAAATGAGCCATTGGACGTCTTGTTCATATGTAGCTGGTATGGAGGTTACCCCGTGCCCACTCTGGACTGGCATGAGGTCCTTGAAGAACATGTAATAGCCAAGGGTCCCACTGTCAACTCCACATCCAAGGAAACGGAGCACTTGGAGGTGCATGTGAATGGGTTTATACTGCACAGTGGTGAGGAAGTGAAGTGTATTGGACATCATGTGACTGGGGTGGAGAATTCCTGCTCCTTTAAGCTCAAGTCACCATATCCCTTAGGAGATCCCATGGTAACGGCTTTGGTGGGCAGCAGTATCACCCTCAGCTGTACTGAGAGCGAATCTCTGCCGCCGGCTAAGACTGTCTGGAtgcaaaaggacaaaaaaatcaTCAACACCACCTCCAAATATATCGTGTCTGATCATAACCCCAATTACAAACTCACTATAGTCAATGTAACGAAAGAAGATGAAGGGGTCTACTACTGCTACAGTATAAACCCTGTTGGCCCAAAAGAGCTGGAAGTGTATCTTACTGTGAAGACTTCTGCGGGTAATGAGGGGGCTGTGGTTGGAgtctttgtttctgttttgataATGATGATTGGAGTCATTATCGGTGTGACAATATATACAAAGCGGGATCGAATTTGTATTGGCTTGGGATTTAGTCATTTAGAGGATGACAGAGGGGATATACTGAGTTTAGTGGATTCAGACGAAGAGGAAATTTTCCATGAAACGGTTCCACAACTCCCCCCGCAGACAAACGGACATGCAACCACACTCGTAGAGATTCACAGGATACCATCCAGTAAGTCCGCAGCGTCCCAAATGGCATTTAGATgCGATCATGAAGACAATGCAGACAGTACAGTGCAAAATAATGATCAAACACATCCAGAACCACCACAACAGACAGCACACTGTTAGTTATCAGTTTAAATGTACAGAAACGAAATTTTCCAAATGGTCAATTCTgataaattattagtatttttgtgtGGTATTTTGCTTGTATAATATTCCATCAATctgtgtaaagtgtaaagttattaaactcattttagagagaggccctgtttttattttcagtattagTTTTTAACAGACTGGCCTCAGTTCATAACATTAAAACTTGTACCAGTGAAATGTGTTATGAAACGTTATTATTACTTGAACTGGCTTGAATGATGGTTTCTGTAAAATTGTATGGGTGAACCTGAACAAAATATAACCGGGTCATATTTCgtggcaaaataataataataaaccctTGATAATacgaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47774 lncRNA downstream 214922 1289278 ~ 1291763 (-) True G32409
TU47599 lncRNA downstream 454506 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 627543 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 683856 820615 ~ 822829 (-) False LOC122344906
XR_006250945.1 lncRNA downstream 684221 820190 ~ 822464 (-) True LOC122344906
TU47832 lncRNA upstream 856 1513045 ~ 1513312 (-) True G32440
TU47864 lncRNA upstream 25209 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 29037 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 94236 1606425 ~ 1607747 (-) True G32486
TU47992 lncRNA upstream 154509 1666698 ~ 1666906 (-) True G32572
XM_043239847.1 mRNA downstream 453 1501467 ~ 1506232 (-) True wsb2
XM_043240640.1 mRNA downstream 11998 1424404 ~ 1494687 (-) False ksr2
XM_043240639.1 mRNA downstream 11998 1424404 ~ 1494687 (-) True ksr2
XM_043240454.1 mRNA downstream 103561 1359837 ~ 1403124 (-) False nos1
XM_043240453.1 mRNA downstream 103563 1355359 ~ 1403122 (-) True nos1
XM_043240475.1 mRNA upstream 12713 1524902 ~ 1526918 (-) True LOC122345935
XM_043238410.1 mRNA upstream 31229 1543418 ~ 1564546 (-) False LOC122344835
XM_043238411.1 mRNA upstream 31229 1543418 ~ 1564433 (-) True LOC122344835
XM_043238289.1 mRNA upstream 57215 1569404 ~ 1570066 (-) True cldn26
XM_043240429.1 mRNA upstream 59959 1572148 ~ 1579628 (-) True lztr1
XR_006250937.1 other downstream 152271 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 170498 1322296 ~ 1336187 (-) False castor1
XR_006251108.1 other downstream 170501 1312604 ~ 1336184 (-) True castor1
TU47988 other upstream 162301 1674490 ~ 1693974 (-) False ypel1
TU48139 other upstream 454448 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 454448 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 507919 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 984315 2496504 ~ 2554146 (-) True G32857

Expression Profile