RNA id: XM_043238243.1


Basic Information

Item Value
RNA id XM_043238243.1
length 2165
RNA type mRNA
GC content 0.54
exon number 12
gene id cux2a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30942514 ~ 30951488 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGCTGTGGCCGTCCTCTCCTCGGCTCTGGTCTGATGTGAGTCTGCTGAAGCTCTGCTGGAAACACGCCGCTATCAGGAGCACGTCCACAAACTCATGgatctgtgtgtgtttgctgcagCGCCACCAACGTCTGATTTGGAGACGATGGTCGCGTCGAGAGATCGTGACCTTCACCGTCTGGAACAGGAAGTGCGACGGCTTCAGCGTCTCCTGCAGGAAGTCCAGGTGCGATCGGCCAATCGCGTCGCTCTGCTGGAACAGCAGCTGGCCAGTAAATCCCAGCACATAGAGAGACTTCAGGCCGAGCTCCAGAACCAGCGGGACCACGGAAGATCCGGACCGAGCTCAGGACTCTCCGAGCGCTGATGCAAAGCACTGAAGTAGTTTCGGTTTCTGATGTCAGGAGCATCTCTGTTGATGAAGATCCTGTGATCCAGAAAGAAAGGACAGAGTTTCATCCGTGCGCTGGAGAAGAAGAAGCCCTGAATGAATCCTCTTCATGGTCTCTGAGCGTCCAGAGCTTCATCAAAGAGGAGACCGACTGTGGTGAAGACGAGGAGGAGTGTGACACGGCTCGATTAGCTCGGCGGGTGAAGGACGCTCTTCAGCGGCTCAACATCGGTCAGCGGGTGTTCGGTCACTACGTGCTCGGCCTCTCTCAGGGGACCGTCAGCGACATCCTGGCCAGACCCAAACCCTGGAGCAAGCTGACCAGCAGAGGAAGAGAACCCTTCCTCAGAATGAAGCACTTCCTGTCTGACGAGCGCAGCATCCGAACGCTCGGCGCCATCCAGGAGACACTGAGAGGCGTCTTGGTGTCGTGGGCCGCTCCTGAAAGAAGCTCAGAAGACGTGATCAAGAAGGTTCTGGATCAGAGACGTCTGCAGATGCTGGATATTAATgacgatgatgacgatgatgaagGCAGCAGGCGGGATGGAGACTCATCAGATGACATCATCAGGAGCATCCTGCAGCAGGCCAGACACGAGACGCAGACGGAGACGGCCCGGCGGGGAGGAGAGGATTCTGGGACGCCGGAGCCCAGCGCTCGGTCCACGGCTGATTTTGTCCAAAGCATCATTCAGAAAGTCAAGTGTGAACTAAAAGAAGACCCAGGGCCCTCAGCTCCTCCAGCGGGTCCGGGGCCGGAGCCTCAGAGACCTCGCTCCTGTCCCATCAGCAGCGGCTCTGAGCTTCACGCTCTGTGTCTGGACACACTCCACATCACACACAGAGTCAAAGAAACACTCAGCACCAACAacatagGTCAGAGAGTGTTTGGTGAAGAGGTTTTGGGTTTAACACAGAGCTCGGTGTCTGAACTGCTGTCACATCCcaaaccctggaagaaactcaGTCTGAAGGGAAAGGAGAACTTCATCCGCATGCATCTGTGGCTCCAAGACCCTCAAAACATCCAGAAGATCAAGGATAAGAAGAAGATGGACCATAGAGCTCGTCTGAAGCGTGTTCTGACCGGATCAGGGGGTTCCTCTCAGAGGTGGCTGGACGCAGGAGCTCAGGGGTTTAGTGATGACCGGGGCCGGTGCGAGGCCACGAAGAGGCCGAGGGTGATCCTCAGCGCTCCGGAGAGAGAAGCACTGCTGGAGACGTATCGGACGGAGCCGTATCCGTCTCAGATCACCGTCGAGAGGCTCGCGGCACGGCTGGGTCTGAACACCAGCACTGTTAGCAACTGGTTCTACAACTACAGGTCTAGACATAGACAAGATGTTCTTTCTGCTCCAGGAGAACCCAGAACTTTTCCGAGTCCAGTCGTTCGTAGTCCGGTTTCAGCCGGTGTAGACCGAATCAAACAGGAGCCCAGTGATGGAGAGACGGAGGACACGGATCTGCTCGGACACGTCTCTGTCGGCGTACAGTCCATCTCCAGAGTGAAGACCGAGAGAGAGGAAGATCTCTTCTCCTAAACAATGAAGAAAACGTCTCCCTGATGAGCTCcaaatctgtctttttttattcagaatttaATTTCAGGAATAAGTAAACCCTGACTGGCCAGattggtttatatttttttttagcgtgACTGAAGAATAATTGTTGGTTGTATAGTTGTTTGATAACTACTTGTATAAGTTCATTTATATTCGGTCTGGTTTGGAGACTAAATGGTACATGGGAAAGTTTGCTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60350 lncRNA downstream 17317 30920851 ~ 30925197 (-) False G40760
TU60352 lncRNA downstream 17317 30920851 ~ 30925197 (-) True G40760
XR_006250920.1 lncRNA downstream 17317 30921178 ~ 30925197 (-) True LOC122344700
TU60357 lncRNA downstream 22914 30888340 ~ 30919600 (-) False G40762
TU60356 lncRNA downstream 23004 30866243 ~ 30919510 (-) True G40762
XR_006250921.1 lncRNA upstream 7956 30959444 ~ 30963507 (-) True LOC122344701
XR_006250922.1 lncRNA upstream 22830 30974318 ~ 30974883 (-) True LOC122344702
TU60379 lncRNA upstream 26121 30977609 ~ 30978322 (-) True G40782
TU60395 lncRNA upstream 86917 31038405 ~ 31039457 (-) True G40794
TU60399 lncRNA upstream 136704 31088192 ~ 31094923 (-) True G40798
XM_043238238.1 mRNA downstream 632 30920817 ~ 30941882 (-) True LOC122344688
XM_043238521.1 mRNA downstream 106780 30831189 ~ 30835734 (-) True rabepk
XM_043238534.1 mRNA downstream 172607 30765631 ~ 30769907 (-) True LOC122344907
XM_043240566.1 mRNA downstream 187574 30734104 ~ 30754940 (-) False golga2
XM_043238956.1 mRNA upstream 27105 30978593 ~ 31052589 (-) True mcc
XM_043238245.1 mRNA upstream 102436 31053924 ~ 31064355 (-) True rcl1
XM_043238241.1 mRNA upstream 122555 31074043 ~ 31081265 (-) True LOC122344691
XM_043238248.1 mRNA upstream 157235 31108723 ~ 31112733 (-) True rplp0
XM_043238526.1 mRNA upstream 191089 31142577 ~ 31155113 (-) True gusb
TU60335 other downstream 116156 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 116156 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 149795 30789633 ~ 30792719 (-) True G40713
TU60256 other downstream 245826 30631028 ~ 30696688 (-) False G40711
XR_006251005.1 other upstream 750965 31702453 ~ 31711737 (-) True apooa
TU60769 other upstream 769782 31721270 ~ 31722906 (-) True G41035
XR_006251008.1 other upstream 1170796 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 1262788 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 1262804 32214292 ~ 32293782 (-) False LOC122346090

Expression Profile