RNA id: XM_043238260.1


Basic Information

Item Value
RNA id XM_043238260.1
length 1485
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122344712
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17382031 ~ 17384148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaaaaaaaaaaaaggctctttCTTCGACTCCCCCAGAGTTTAAGAGTTgagttttacaatttttgaatctattcatccgggtctggcgataacacttttagcatagcttagcatagatcttTATAcctgattagaccagaagcatctagtttaaaaatgtttgactcttctgtagttacctTGTGTATTAACCCcgacagaaaatgaaaacagagaCACATAAAACTGGTCATCCATAGTTGCCGGTTTAGATCATTTGAGGGACAGTAACAAATGCTCATCTTTTCATCGGGGCCTTTGATTACTGTAATTCTCTAACAAACCTCACTGCTCTTGTCTTATGATGGCCTACCAAaggaacattttctttttgataaaccagtgtctccactcctcaTCGCATCTGGCATGGCTAGAGATTGGCCGGATGCTCGTGGGATTTGGTAAGACAGAAGAACTACTGACCTGTTTTTAGAGCATAGCACTACATTCCTATAGCTCATCCTTTACTAGTCACCCATAAGCTGGCTCAGATGTACTCACCTAAATATCTGTAATTCTGAAAATCCTTTTTGGCATTCCAGTTACAGAGAGACATTTTATACTTGATAATAACAGCCTGAACGATTTGTAACGCAGTAGATAATCAACAATTAATTCGGTCAACCTGAGAGAAATGAGAGGAATAAGTTATCAGGAGATATTTTATCATGCTGAACCAGTCCAgacttcccttttttttttttctttttctgactGGAAACTCCAGGACCACTTCTTGTTTGACAAGCCCGTATCACCCTTGCTGACTTGTGCAGGAATGGCGCGGGATTGGCCCGATGCCAGAGGCATCTGGcacaacaatgaaaaaacatttttaatctggATCAATGAGGAGGATCACACGCGCGTCATTTCCATGGAAAAGGGTGGGAACATGAAGAGGGTGTTTGAGAGGTTCTGCAGAGGACTGAAAGAGGTCGAGAGGTTGATTCAGGAGAGAGGCTGGGAGTTTATGTGGAATGAACGCTTGGGCTACATCCTGACCTGCCCCTCTAACCTGGGCACCGGCCTGAGAGCTGGAGTCCACGTCCGCCTGCCGCTCCTGAGCAAGGACTCACGCTTCAATAAAATTTTGGATAGTCTCAGGCTACAAAAACGTGGCACGGGAGGCGTGGATACTGCGGCTGTGGGTGACACTTTTGACATTTCCAACCTTGATCGTCTAGGCAAATCTGAGGTTGAGCTTGTTCAGTGTGTGATTGATGGTGTCAACTACCTGATCGACTGTGAAAAGAAACTTGAGAAGGGCCAGGATATCACCATCCCTTCACCATTAGCCCAGTTCAAGAAATAATGCCATCCTTGCAAGAAGAACTGAGAGCTAGGCAGCTGAGAGATCTGTAAGCTGTTATTCACGACATCCGCAGGTCTTTTTAAAGGGAACTCAACTGaataaattcttattttaattctg

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004111 creatine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55147 lncRNA downstream 29621 17351315 ~ 17352410 (-) True G37363
TU55140 lncRNA downstream 32065 17346469 ~ 17349966 (-) True LOC122344738
TU55103 lncRNA downstream 216879 17162677 ~ 17165152 (-) True G37340
TU55038 lncRNA downstream 490841 16890704 ~ 16891190 (-) True G37310
TU55037 lncRNA downstream 491713 16889042 ~ 16890318 (-) True G37309
XR_006250975.1 lncRNA upstream 261948 17646096 ~ 17686024 (-) False LOC122345155
XR_006250974.1 lncRNA upstream 261948 17646096 ~ 17684773 (-) False LOC122345155
TU55241 lncRNA upstream 261951 17646099 ~ 17679650 (-) False LOC122345155
TU55242 lncRNA upstream 261951 17646099 ~ 17684795 (-) True LOC122345155
TU55243 lncRNA upstream 261951 17646099 ~ 17679650 (-) False LOC122345155
XM_043239777.1 mRNA downstream 22290 17354929 ~ 17359741 (-) True LOC122345546
XM_043238290.1 mRNA downstream 31651 17347291 ~ 17350380 (-) False LOC122344738
XM_043238288.1 mRNA downstream 36416 17329196 ~ 17345615 (-) True LOC122344736
XM_043239185.1 mRNA downstream 60973 17316381 ~ 17321058 (-) True LOC122345238
XM_043238522.1 mRNA downstream 122084 17258466 ~ 17259947 (-) True LOC122344899
XM_043239051.1 mRNA upstream 202675 17586823 ~ 17592357 (-) False ccnh
XM_043239049.1 mRNA upstream 202675 17586823 ~ 17591447 (-) True ccnh
XM_043239050.1 mRNA upstream 202675 17586823 ~ 17591422 (-) False ccnh
XM_043239832.1 mRNA upstream 232065 17616213 ~ 17632162 (-) False tmem161b
XM_043239831.1 mRNA upstream 232065 17616213 ~ 17632079 (-) True tmem161b
TU54999 other downstream 668864 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 668864 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 748910 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1003536 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1125292 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 2483238 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 2483238 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 2484666 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2667511 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2741441 20125589 ~ 20127390 (-) True G38140

Expression Profile