RNA id: XM_043238263.1


Basic Information

Item Value
RNA id XM_043238263.1
length 1875
RNA type mRNA
GC content 0.55
exon number 11
gene id bmpr1ba
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32638260 ~ 32681474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACAAGAGCGAGAAGCTGAGcTAACGTTCTGGACACCATGCTGCTGAGGAATTCTGGGAAGGCGGACGAACGCCGGGAGACAGGAAGCGAGGCTCCGGCTCTACCTCAGCGCTTCCTGTGGTGCTACTGCTACCATCACTGTCCGGAGGACTCCACTAACAACACGTGCAGGACGGACGGTTACTGCTTCACCATGGTGGAGGAAGAGGGTGGAGCGGCTGTGGTGACGTCAGGCTGTCTGGGTCTGGTCGGATCAGAGTTTCAGTGCAGAGACACGGGGAACTCTAAACAGCGGCGAGCGCTCGAGTGCTGCACAGATCAGGACTACTGTAACAGAGACCTACATCCAACACTTCCTCCTCTACGAACACCCAgttACGTGGTGGGAGACATTCATCACATCGCTCTGCTCATCTCAGTGACTGTCTGTAGCTTCATCCtcaccttcatcatcatcttctgtTACTTCAGGTATAAACGTCACGAGTTAGCTCCTCGCTACAGCCTCGGCCTGCATCCAGACGAGACGTTCATTCCTCCGGGAGAATCCCTGCGGGATCTCATAGAGCAGTCCCAGAGCTCCGGCTCAGGATCAGGACTCCCCCTGCTGGTGCAGCGCACTATAGCGAAGCAGATCCAGATGGTGACACAGATCGGGAAGGGCCGTTATGGAGAGGTGTGGATGGGGAGATGGAGGGGAGAGAAAGTGGCTGTGAAAGTCTTTTTCACTACAGAGGAGGCCAGCTGGTTTAGAGAGACGGAGATATATCAGACTGTCCTCATGAGACATGAGAATATACTCGGTTTCATCGCGGCCGATATTAAAGGCACGGGCTCGTGGACTCAGCTCTACCTCATCACCGACTACCACGAGAACGGCTCTCTCTACGACTATCTGAAATGCACCACCCTGGACAGCCGGGCCATGCTGAGACTGGCCTACTCGTCCGTCTCCGGCCTCTGCCACCTTCACACGGAAATCTTTGGCACGCAGGGCAAACCGGCCATCGCTCACAGAGACCTGAAGAGCAAAAACATCCTGGTGAAGAGGAACGGAGCCTGCTGCATCGCTGACCTCGGCCTGGCTGTCAAGTTCATCAGCGACACTAATGAAGTGGACATCCCTCTGAACACACGCGTGGGCACCAAACGCTTCATGGCTCCCGAGGTTCTGGACGAGACTCTGAACAGGAACCATTTCCAGTCCTACATCATGGCCGACATGTACAGCTTCGGCCTCATACTGTGGGAGATCGCCCGCCGATGCGTGTCTGGAGGTATCGTAGAGGAGTATCAGCTGCCCTATCACGATCACGTTCCTAATGACCCGTCGTACGAAGACATGCGAGAGGTTGTGTGTATTAAGAGAATACGGCCGTCTTTCCCTAACCGCTGGAGCAGTGATGAGTGTTTGAGGCAGATGGGGAAGCTGATGACGGAGTGTTGGGCTCATAACCCGGCGTCTCGTCTCACCGCCCTGCGTGTTAAAAAGACGCTGGCCAAGATGTCGGAGTCCCAGGACATTAAAGTCTGAGAACAGAGCGGCCAGCACGGACACTTAACCCCCAGCTCACTGCCTCACGAGAGAAATCTCAGGACGGAGCCGGAGCCGGAGCCGGTCCCGCTGCGTGACGCAGGGCCTCGGCGAGCGAGATCACGTGACTCTCCTCACAGGACGGTCAGCTTGCTCTTTCCACAATCTGTTCAGCTCCAACAGGACCGTGGTTTTGGATCGTATCGGATTTGTGGCGTCAGTCAGTCAGCTTTCAACAAGTTTCCCGCCTTTTTTTGGTGGGCTGtgccttatttattttgtaaatagaTGAAAATGAGATTGAAGCGTCAATGTACTTGAATAAATGCTCTAAAGAgaa

Function

GO:

id name namespace
GO:0048263 determination of dorsal identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61093 lncRNA downstream 111191 32513392 ~ 32527069 (-) True G41273
TU61019 lncRNA downstream 157547 32480355 ~ 32480713 (-) True G41217
TU61018 lncRNA downstream 160420 32477262 ~ 32477840 (-) True G41216
TU60982 lncRNA downstream 192979 32444282 ~ 32445281 (-) True G41191
TU60989 lncRNA downstream 199115 32438619 ~ 32439145 (-) True G41198
TU61133 lncRNA upstream 110007 32767186 ~ 32767409 (-) True G41303
XM_043239474.1 mRNA downstream 173637 32459458 ~ 32464623 (-) True LOC122345374
XM_043238594.1 mRNA downstream 216662 32416225 ~ 32421598 (-) True ostf1
XM_043240476.1 mRNA downstream 295516 32315687 ~ 32342744 (-) True LOC122345937
XM_043240757.1 mRNA downstream 323629 32312799 ~ 32314631 (-) True LOC122346085
XM_043240756.1 mRNA downstream 328120 32301359 ~ 32310140 (-) True zgc:73226
XM_043240243.1 mRNA upstream 27334 32684513 ~ 32719171 (-) True pdlim5a
XM_043240117.1 mRNA upstream 67719 32724898 ~ 32733732 (-) True opn4xb
XM_043240162.1 mRNA upstream 81238 32738417 ~ 32757869 (-) True LOC122345737
XM_043238448.1 mRNA upstream 113050 32770229 ~ 32799945 (-) True nipbla
XM_043238449.1 mRNA upstream 144839 32802018 ~ 32812625 (-) True slc1a3a
TU60927 other downstream 323805 32283537 ~ 32314455 (-) False LOC122346085
XR_006251086.1 other downstream 344478 32214292 ~ 32293782 (-) False LOC122346090
TU61129 other upstream 86988 32744167 ~ 32745881 (-) False LOC122345737

Expression Profile