RNA id: XM_043238273.1


Basic Information

Item Value
RNA id XM_043238273.1
length 2084
RNA type mRNA
GC content 0.40
exon number 5
gene id ptrh1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20058275 ~ 20061197 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCTCCCATTGCCTTTCAACAGCCTGGATCGGAGAAAGCATGGGGTCCTACTGAAACGCAAATCCAATCGACTACAAAACGTCTTTATGTCAATACATATGCCCGCTAAATATACGTTTCGGTTGCTGTGCTTTGTAGTTACGATTATTCCGTGATATAAATGTCCACCGTTCGAGATCTGTCTGATGAAAGTCCTTTCGAAACCGTGTAACAGGCCGGTATCGTGAAGTTTAAAGTCAGCATGACTCATAATGAGTAACACGTTACGAGGTAAAGTCTGGGCTTCTGTGACACAAGCGTTCAAACAGCCGATGGCTCTCATAAGACGAATGATAACAAAGCTGCTCCATCGAGTGTTGATGAGCTCGCTGCCGTCACCGAAGATGATGATGACCGGTCAAACCACAGCCGACTGGACCAGAAGCAAAATGGTTGTGGGGCTGGGAAACCCTGGCATGAATGGCTCTCGACATAGTGTTGGGATGGCTGCGCTCGCAGCGTTGGCTGAACGTTTGGGAGTTACAGACAGCTGGAGATCTGACCGGCAGGTTTCAGGGGAAGTCATTGTGACACAGCTTCAAGATATCAAGCTGATTCTCCTTCGACCCAAGCTGCTCATGAATGTGAATGGTGTGAGTGTGGCAAAAGCAGccagcaaatatttaatttcacccGAACATATTCTCCTGATTCATGATGAGCTTGACAAACCACTTGGAAAGTTCGGTATTAAACATGGTGGAAGTGCAAGGGGTCACAATGGTGTAAGGTCATGTGTGGACTGCCTTCAGACTGATGTGATGCAGCGGTTGCGTATTGGTATCGGCCGACCATCGGGAAAAACGCCGGTTGACCGCTATGTTTTGGGACGGTTTTCACAAGAGGAACAAAATGTTCTAGACCCCGTCCTGAAGCAGAGTGTTGACGTTCTGCTGACATGCATCACAGAATCCCAGTCCCAGACTTCTCCAGCAGAGGGAAGAAGAGCGTCACGCAGGAACAAAGCCAGGACTCTTTCACCTCCTCAGGACACCACAGAAGAGCAGAAACAGAGCTGACCTACACTTGAGATGTTTGATAACTGCGTTTCTTTTCTGAAGGAGTAGAGTTTTGTGATGCTGTGCTTAGATCCCCAGAAGAGGGAAGGACACTGTTTTtcataaaagacattaaaataaaatagtaatttttgaTAACTCTGTACTGAAAGCTTTGTTTGGTCTATGTCAGATTTTGAAGTTGAGCCTATTGGGAGGCAGCAGCTTGCAGTTTGTGGTATATTAtactaaacaaatatatataacattgaCAAATTTGGGGGGAAATGCAGAAGAttcaataaattagaaatacCAATGCAGTGTTTAAgcaaacatttataatgcttgACAACAATTATAAGTAAATATCAGAAACTTGAAcatgtgagaaaaaaatgagAGGTTACATCACATCATGTTACATTAAATATCAGTGTTTTTCAGAAGCGCCTGTTTAAAACCTGGACAAGACTGAGCTCActataattatcatttattgAGTCATTTCATGTGATTTGGTGTGTTCATAAGTTCATACGTTTTTCTTATGATGTTCAAGATAGCTCTGTTACTTCACAAATGTGTGCTTGAATGAGAATGCACCAGAAATATGTTGTTAAATTAGCTTTTGTTCATCCTTTTTGGATCGAAGTTTAAatctacaacaaaaaaaaaaaggggtttaaaataaatatgacgaaaataaatatttcagattctAGGTAACAAGTAAATTATATAGTTGATCATGTGGCTCTTTATACAGACATCTAGATGATCTTCAGTTGAAGCTCAAGATGTTCTTTGGATCATCTCAAACCATGCCTGAGTTCATGTGGGTCAAGTGCTGTTGTCATCAAAGCAAAACAggcaaatttaattacattttatccaCTCAAATAAATCGCTTATAACTTGCAATATGCTTTATGAAATTAGAAAAATTCTAAAAAGCGTTTTGCACCCCTTTatgtcattattataaatatgtataacaCACATTTTGCTGTGGCCCAACAACATGAACAAATGTTTGGAAAGTA

Function

GO:

id name namespace
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K01056 PTH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56164 lncRNA downstream 2477 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 101613 19956428 ~ 19956662 (-) True G38019
TU55943 lncRNA downstream 354590 19703420 ~ 19703685 (-) True G37928
TU55941 lncRNA downstream 355932 19702069 ~ 19702343 (-) True G37926
TU55882 lncRNA downstream 547993 19505921 ~ 19510282 (-) True G37877
TU56332 lncRNA upstream 94584 20155781 ~ 20160794 (-) True G38147
TU56349 lncRNA upstream 215471 20276668 ~ 20279101 (-) True G38156
TU56353 lncRNA upstream 223426 20284623 ~ 20286229 (-) True G38158
TU56356 lncRNA upstream 236111 20297308 ~ 20677930 (-) True G38161
TU56326 lncRNA upstream 334440 20395637 ~ 20396293 (-) False LOC122345844
XM_043238766.1 mRNA downstream 18106 20035492 ~ 20040169 (-) True cfap157
XM_043240675.1 mRNA downstream 122701 19865019 ~ 19935574 (-) False kcnt1b
XM_043240668.1 mRNA downstream 122701 19865019 ~ 19935574 (-) False kcnt1b
XM_043240665.1 mRNA downstream 122701 19865019 ~ 19935574 (-) False kcnt1b
XM_043240670.1 mRNA downstream 122702 19865019 ~ 19935573 (-) False kcnt1b
XM_043239704.1 mRNA upstream 10085 20071282 ~ 20075708 (-) True pmpca
XM_043240344.1 mRNA upstream 34272 20095469 ~ 20109238 (-) True ptgs1
XM_043239939.1 mRNA upstream 66690 20127887 ~ 20130221 (-) True zgc:101858
XM_043239940.1 mRNA upstream 69262 20130459 ~ 20131947 (-) True ppil3
XM_043239941.1 mRNA upstream 70987 20132184 ~ 20138436 (-) True lrrc8ab
TU56161 other downstream 2477 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 122699 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other downstream 122699 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other downstream 122699 19868814 ~ 19935576 (-) False kcnt1b
TU54999 other downstream 3345108 16687260 ~ 16713167 (-) True G37277
TU56325 other upstream 64392 20125589 ~ 20127390 (-) True G38140
TU56460 other upstream 867953 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 1303041 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1551491 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1747816 21809013 ~ 21826105 (-) False akap10

Expression Profile