RNA id: XM_043238280.1


Basic Information

Item Value
RNA id XM_043238280.1
length 3091
RNA type mRNA
GC content 0.51
exon number 15
gene id susd2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3822118 ~ 3847170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCAAGTTCAAAACTTTACAACCCTGATGCGCGTGCACGTGTGCTGATAATGCACTAGATAGATATCAGCATtagaagaaataaatgatgtgCGCATTTCATGTGCCAGgagttttatttattgcctGCAAGCTGCAGCGAGTCCTTGACTGTTAAACAGTTACAaggtacagagagagagagagagagagagagagagagagagagacctttGTCACAATGTCATGACTGAGAACCACATTTGCTTTTCATACTGTGTTTGCAATCTCCATAAGACgctttaaattgatattaaaccAGCTCGGGTTATTCCAGCCAGGAACAATGCTGTGCAAGTATAAGTACACAAcccatctgtgtgtgttcatggtgcTGCTCCTTCAGCTGTTATCCAGGACTGCAGCGCAGTCCTGTGCCAGCAGCTGTGGAGAGAAGTTCAGCTCATGCTCTTGTCATGCGACGTGTGAGTCTCTGAGGGACTGCTGTGCCGATTACAATCATTTCTGCCTTGACATTGAACCACGCTCTGGATCTTTGCTGGGAGGCGCAGACTTTAAAATCCTCAACGTTACGTTCCAGCAGAACATTAACCTCACCTGCAGGTTCAGCTCGGAGATCGTGACAGAGGGATACGTGGATGAGGACGGAGCGGGTCACTGCATCACTCCTCTGCTCTACGAGTCGGGCTGGATCCCTTTTGAGGTGTCCACGGATGGACTGCACTTTGACAGATCGGGGCGGTGGCTCTCAGTTCACCACAGTAAGCTGAGTCCCTTTCACACGAGCGTTCTGGTCAACGCCACTCAGTGGCAGTACTACGGCACTCCAGGCGTCGGCGGGGACCTAAAGATCATCTGGATACCGTCTCTAATTAAGGCAGAGAGAGTCAACATCGAGCTGTGGGGTTACAATGAGACAGGAGAGGCGTATTCTGCGAACTGGGAGGCGGAGTGGAAGTATCTGTACACCGTGGGCAGGGATGTACCCAACACTGGAGTTTTTAGTTTTACCCCACATATCGCCGATAAACCCTACTCCCTTTGGGACCTAGGGAGCATGCGGGTCAGCCCGAGCACTAAACCAGACGGAGCCCAGAATGTGAACGCTCTGTGGAGTGGAGCGCACGCGGTCGCCTGGCATCTTGAGGAAGCCTTCAGGAGGGACTCTGCGGCCTGGGCCCTGGAGAAGTGCATCAGCTGGGATAAAGAAGAGAAAGCAATGCCCGACTTCCTGACTGAGATCACCGATTGCCCCTGCACACTTGCCCAGGCCCGCGCTGACACCGGGAGATTTCACacgGATTACGGCTGTGATATGGAGGCGGGTAGTTTCTGTGTTTACCATCCCGGGGCGGTTCACTGCGTCAGAGCCATTCAGGGAAgTCCTGAGTACGGTGCGGGTCAGCAGTGTTGTTACGACAGCGCCGGAGCTCAGGTGCTCACGGGGGACTCTATCGGTGGCAGCACCCCGGATCGAGGGCACGACTGGGGCGCGCCGCCCTACAGGAAACCCCCCAGAGTCCCAGGATTCTCTCACTGGAAGTATGACGTCATCAGCTTCTACTACTGCTGCCTGTGGTCAGATAATTGCAAATACTACTTTACTCACCGGCCGTCCAGTGACTGCAGGACATATCGCCCTCCTAGAGCCGCCGTTGTTCTCGGTGATCCCCACTTCGTGACCCTCGATGGCGCGACTTTCACCTTCAATGGGAAAGGAGAGTACGTTCTGCTTCAGTCCTCAGACTATCAGCTGTCTGTCCAAGGCAGGACGGAACCAATGAAATTTGAGAACGGTACTGTTGCTATGGCGACGCGACTCAGTTCCGTGGTCATGAGGGAGAAAGACTCTGATGTCATCGAGGTACGTCTCACAGACCAAGCGGATGTGCTGCAGGTTTTAATGAACCAGCAGGTGCTTTCCTTCTCTGAGCAAAAATGGATTGACCTTTCAGgtgtttttgttttttcccccaaagCCACGAACGTGACAGTGATGTTTCCGTCGGGGACAGGGGTTGAGGTCAGGGCAGGTGAAGGGGTCATGACCCTTACAGTGTTACTGCCACATGCCCTACAGAACCGTACGCTGGGGCTGCTCGGCACCATGAATGATGACCCTGAAGATGATCTGACCTCCAGTGATGGACTGATGATCCCTCTCAACAGCAGCGCTCAGGACATATTCATCTACTGCGCTGGCTggGCCGTTACGAATGAGACTTCTCTTTTTACTTACGACTCGACCTACCTCCTTAACGAATATTCCAGTGCCCCAAAGCACGATCCGTCTTTCGTCCCAAACTTTGGGGTGACTGAGGACCCGGAGGACCCCTTGCTGACGCCGGTGCTGGAGCTGTGTGCTGGAGACGGGGCCTCCTTCTGTAAATACGACGCTCTTAGCATGCGCAGTCTGGATCAGGGCAATGCCACGCTGCTGGCCTACCGGAGCCATGCGTCCACGAAGAAAGCTCTGGAGCCTGTTCGGTCCTGCGGTTGGCTGTCTCCACCTAACCACGGTCAGAAGGAAGGAACCTTGTACCTGGAAGGGGCAAAGGTCACGTTCTCCTGTCACAGCGGGTACCGTCTCTACGGGTCCCAGGAGCGCACGTGTCAGGCGGGCGGCGAGTGGTCTGGAGAAGATGCGCACTGCGTGGCTGATAATACGTTGGCCATTGTCTTGGGGAGTCTCGGCGCGGTGTTGGCGTTGGTCGTCATGGTGATAGCAGTCGTTGCATAcacaaagaaacagaacaaagagGCGAGGAAGCAACATGATGACAAGGTGACCTATCAGCAGTCTGGGTCACATctgtaaaaagattttattaatgGTATTAGACTTGTTTAAATGTTACGTTTTTAGTTTAACATTCTTTGTTTGAGCGTGAATCTTTGTTTGTGGACAGTAGTTTAGTTTGTGTCTGCTAGAATTGTTAGTTAATTTAAGTAGAACTGAACTTTTAAGTCTGTAAATTGCATCAGCATTACTATAAATCcgtttttatagtttaatataatttaatttgaaattatttgcaCAGCCAATTTGATtgcacttaaaaatgtaatgcagtaGCTGAACttaag

Function

GO: NA

KEGG:

id description
K23820 SUSD2; sushi domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48785 lncRNA downstream 73102 3744675 ~ 3749016 (-) True coq5
TU48784 lncRNA downstream 73102 3747616 ~ 3749016 (-) False coq5
TU48777 lncRNA downstream 169230 3648466 ~ 3652888 (-) True G33124
TU48765 lncRNA downstream 203064 3617937 ~ 3619054 (-) True G33114
TU48594 lncRNA downstream 431739 3388284 ~ 3390379 (-) True G33008
TU48808 lncRNA upstream 51421 3898591 ~ 3904546 (-) True G33140
XR_006250999.1 lncRNA upstream 120686 3967856 ~ 3968964 (-) True LOC122345413
XR_006250997.1 lncRNA upstream 203612 4050782 ~ 4051472 (-) False LOC122345411
TU48810 lncRNA upstream 203745 4050915 ~ 4051469 (-) True LOC122345411
TU49028 lncRNA upstream 1012829 4859999 ~ 4902402 (-) True G33300
XM_043240848.1 mRNA downstream 12422 3753979 ~ 3809696 (-) False kremen1
XM_043240847.1 mRNA downstream 12424 3753979 ~ 3809694 (-) True kremen1
XM_043239950.1 mRNA downstream 69354 3747873 ~ 3752764 (-) False coq5
XM_043240173.1 mRNA downstream 159208 3659704 ~ 3662910 (-) True xbp1
XM_043239572.1 mRNA downstream 199714 3619178 ~ 3622404 (-) True si:dkey-1k23.3
XM_043239162.1 mRNA upstream 2323 3849493 ~ 3873889 (-) True slc39a14
XM_043239160.1 mRNA upstream 2323 3849493 ~ 3873888 (-) False slc39a14
XM_043239161.1 mRNA upstream 2323 3849493 ~ 3873888 (-) False slc39a14
XM_043239163.1 mRNA upstream 2323 3849493 ~ 3866574 (-) False slc39a14
XM_043240840.1 mRNA upstream 31480 3878650 ~ 3898578 (-) True piwil2
TU48454 other downstream 809299 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other downstream 861941 2951462 ~ 2960177 (-) True G32908
XR_006250982.1 other downstream 1216203 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 1236692 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 1267972 2496504 ~ 2554146 (-) True G32857
TU48805 other upstream 38255 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 38380 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 297757 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other upstream 297757 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other upstream 297757 4144927 ~ 4193081 (-) False LOC122346168

Expression Profile