RNA id: XM_043238295.1


Basic Information

Item Value
RNA id XM_043238295.1
length 3925
RNA type mRNA
GC content 0.43
exon number 22
gene id rps6ka3a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11029087 ~ 11041122 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCTCGTTCTGACAGACAGGTGAACGGAGCGACGACGCCATGTTGAGGGAAAACGGAAGTGTGTTACTCTGCTCTTAAAAACGTCtttcgaattttttttttggcactttAGAAGTAAAACCTACCCAGAAGGCGACTGAACTGAATTCTTCTTTTATTTACGCGTCGGTTAGGGACCACCCTCTTTGCGGGACTCTTTTTGTGTAACTTTACTGTGACTGACAGCGTCAAATCACTTCACGGGGTGATCGCAAGTTACAGATCGGGACTTAAAGATGCCGCTGGCGCAGTTTGCAGACCCCTGGCAGAAGTTGCCCGTGGGGCATATGGAGAATGAGGATGACTCCATGGTGGAGGATGATGCTCCTCTTCACGATGAGGGCTTGGTCAAGGAAATCAGCATCACTCACCACGTCAAGGAGGGCTCTGAAAAAGCGGACACACGACAGTTTGAGCTCTGCAAGGTGCTGGGCCAGGGATCTTTTGGCAAGGTGTTCCTTGTCAAGAAGATAACCGGGCCCGATGCAGGACAGCTCTATGCTATGAAAGTGCTAAAGAAAGCTACTTTGAAAGTACGAGATCGAATGCGTACAAAGATGGAGAGAGACATACTAGTTGAGGTCAACCATCCTTTTATTGTTAAACTGCATTATGCATTTCAGACAGAAGGCAAACTCTATTTGATTCTCGACTTTCTCAGAGGAGGAGATCTCTTCACTCGCCTGTCCAAAGAGGTGATGTTTACAGAGGAGGATGTAAAGTTCTACCTTGCAGAGCTGGCTTTGGCCTTGGACCATTTACATGGACTGGGAATCATCTACAGAGATCTCAAACCAGAAAATATTCTTTTGGATAATGATGGACACATCAAACTTACAGACTTTGGCTTGAGTAAAGAGTCTATTGACCATGAGAACAAGGCGTATTCGTTCTGTGGTACGGTGGAATATATGGCTCCAGAGGTGGTCAACCGCAGAGGTCACACTCACAGTGCTGATTGGTGGTCCTACGGTGTGCTAATGTTTGAAATGCTGACTGGAACACTTCCATTCCAAGGGAAAGACCGAAAAGAGACCATGACAATGATCTTAAAGGCCAAGCTGGGCATGCCTCAGTTTCTTAGCCCAGAGGCCCAGTCTCTGCTTCGCAATCTGTTCAAGAGGAATCCTGGCAACCGCTTAGGAGCCGGGCCAGATGGAGTAGAAGAGATCAAAAGACATTCGTTCTTTAGCACAATTGACTGGAATaAATTATACAGAAAGGAATTGAATCCTCCATTTAAACCAGTCATCCAGAGGCCAGACGACACGTTTTATTTTGACTCTGAGTTCACTGCCAAAACCCCACGAGACTCTCCTGGTGTTCCTCCAAGTGCCAATGCCCATCAGCTCTTCAGAGGGTTTAGCTTTGTTGCTTCGGGAGTAGAAGAGGAAAGCCAGCCGCCCATTCAGAGCAACCTCAACATGAGCGTCATACTGCAGCAACCCCACAGGAGCACCGTTCAGTTCACTGATGTATATGATGTTAAAGAAGACATTGGTGTGGGCTCTTACTCCATCTGCAAGCGCTGTGTGCACAAGAGCACAGGCATGGATTATGCAGTCAAGATTATCAGTAAGGAGAGGAGAGATCCTACAGAGGAGGTCGAGATTCTGCTGCGTTATGGACAACATCCCAACATCATCACTTTGAAAGACGTGTTTGATGATGGGCGATCGGTGAACCTGGTCACAGAGTTGATGAAAGGTGGAGAACTACTGGATAAAATCCTCAGACAAAAGTTTTTCTCGGAGAGAGAGGCCAGTGCTGTCCTGCACACCATTACAAAAACTGTTGAATATCTGCATGCCCAAGGAGTAGTACACAGAGATCTAAAGCCCAGTAATATCCTGTACGTGGATGAATCAGGCAACCCAGAATCAATCCGGATCTGTGATTTTGGTTTTGCCAAACAACTCCGAGCAGAAAATGGACTGCTGATGACACCATGCTATACTGCTAACTTTGTTGCTCCAGAGGTCCTGAAGAAGCAAGGCTATGATGCAGCCTGTGATATCTGGAGTCTTGGAGTTCTTCTTTATACCATGCTCACAGGGTTCACTCCGTTCGCTAACGGCCCAGAAGATACGCCGGAAGAAATTCTGGCTCGGATTGGCAGTGGGAAGTTCTCCCTTTCTGGAGGATACTGGAATTCTGTATCATTCGAGGCTAAGGAACTGGTATCAAAGATGCTTCACGTTGATCCTCATAAGAGATTGACTGCTGCTCAAGTGCTTCGTCACCCATGGATAGTCCACAAGGACCAGCTACCAAAATACCAACTTAACCGCCAGGACGCACCTCATCTAGTGAAGGGAGCAATGGCAGCCACCTATTCAGCTCTGAACAGAAATGTGTCTCCCGTCCTGGAGCCGGTGGGATGCTCCACGCTCGCTCAGCGCCGTGGTGCCAAAAAGCTGACCTCTACCGCCCTGTGACCTTTCAGATTTAACCCCAAACTACAAATGGCACATAAATTTGTGAGACGTGTGGCGGTTCTACTGTCGTCATGGAATGGCAAcccaaaccaaaaacaaacaagtttttAAGTTCTTGTCATTCATCATCAATGCATCATCGTCATCATGTAGAATATTATTAAACGCTCTTAGGAGAGTATTAAATTCATGTACcattgttttatgaaaatactCTAGAAATGTACGTCATATGggattatatatgaatatgaaaatattccTGTGAGTCTGTGGAGAGAATGTATGATGTTTGAGTCACAGCTTGTTTTCTGTattgtggtggtggtggtgatgtcATGTCTAGCGATTGCATGGAGCCGTACTATTGACTAGTATTATTATCTGATCATAGCTGTGCCCGCCTCTCCAAGACGGACCTCACGTGCTGAAATGGCTTACTcaagcttttcctttttttaaaagaaagagctGTTGGTCAGTAATGCCACTACGCGCAACTTCAGATGGAGTTTCAACACGGTGCCGTGTTGAAACCCTTTGTGAAATCAAAGAGAACTATGCAAGTAAACTTACAATCCTCATTGTACGTCCCTAGAGAATGTAGTGTGTGTCACAAACCAAGTATTTCTTGTTGATATAGTGTTTTAATTGGGCAAAGTGGTGCAAAAACCCTTTGTCATGCACATTTGTCTTAAAGGGCATTTGATTTGCAAAAAATGGCAATCCAAATAGTGACCTCATTCTTAAAATCTTTTTCCTCTCCAGCGGACCAGTACTCTTCATATTAGAGCTACTCATCAGAGCTTATATGAGAACACTTTATGCTGTATGGTTTATAATGGACATGGTAACATTGCCATATATGCGCAGTTTTCTTACCGGGAATGACCAATATACTGTTGTCTTACGCTAAGTGATTCCTAACACTCCTTTTATATGTTCATTCTTCATGAAATTAAAGGGAAATATGCAGGCTGAACCAAGATTGTTCCAATTTTCTCAATCATAATTTTAAAGACTATTcagaatgtattatttttatacctggcaatgaactgtttttttatgtttgtgtatgtatgtctgtatgtgAGGCCACGTGTTTGGTGAGATTTGGGCTACAGACGACGTCCTCTTGTTCTGGAATTAATTTAcacgaattttttttttttttaattgttgctgCTGTAACAGTGCAAGTGATAAACGTGTCCTAATGATCTCTTCTGGCCATTATTGTATAACACTGGccattgtattaaaaaaaaatcagtctgaTTAAGtttcagtaaaataaattttgcaattctgtttaatgtttttctctcaATCAATCATTAGCATTGAAACCTTTCAAATGTGTAGTGCTCTGAACACGCTTTGGATTTCTTAGCccaataaaaatgtgtcttcAAGAgtacaaataaagtttttttatgcaaaa

Function

GO:

id name namespace
GO:0043588 skin development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0048565 digestive tract development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 9895 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 190720 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 212786 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 481462 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 695279 10333219 ~ 10333808 (+) True G35043
TU51912 lncRNA downstream 95930 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 95930 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 146132 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 163378 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 165194 11206316 ~ 11208454 (+) True G35274
XM_043238298.1 mRNA upstream 1082 11020321 ~ 11028005 (+) False pdha1a
XM_043238297.1 mRNA upstream 1082 11020337 ~ 11028005 (+) True pdha1a
XM_043239528.1 mRNA upstream 36202 10986905 ~ 10992885 (+) True si:ch211-114c12.5
XM_043238571.1 mRNA upstream 43039 10981587 ~ 10986048 (+) False capga
XM_043238299.1 mRNA downstream 18 11041140 ~ 11044571 (+) True eif1axa
XM_043240722.1 mRNA downstream 5357 11046479 ~ 11064446 (+) True map7d2a
XM_043240723.1 mRNA downstream 5357 11046479 ~ 11064446 (+) False map7d2a
XM_043240719.1 mRNA downstream 5358 11046480 ~ 11064446 (+) False map7d2a
XM_043240721.1 mRNA downstream 5358 11046480 ~ 11064446 (+) False map7d2a
XR_006251113.1 other upstream 95924 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 298035 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 910961 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1229729 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 2157569 8867513 ~ 8871518 (+) False man1b1b
XR_006251083.1 other downstream 5358 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 883106 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1208016 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1208016 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1472954 12514076 ~ 12516108 (+) False si:ch211-225b11.4

Expression Profile