RNA id: XM_043238304.1


Basic Information

Item Value
RNA id XM_043238304.1
length 2872
RNA type mRNA
GC content 0.50
exon number 10
gene id pbx3a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31979887 ~ 32016468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTTGCGCAACACCGGCAGCATCATCAGGAGGAGCTGCCGCGCGCGAGACGCTCTCACAAGCCGTTACATCTGCTGTAGATCATCCAGAAGAGCGCGAGGCGCCTTTAACAACCTGTCCGCGTTACCCCGCCGGCCCCGCGACGCAAAGGAACCAAAAACGGTCCACCGCAGCTTTTACGCATCGCCGATTTATTTCGCGCTCGAGGACGAGCGTCAAGCGGAGGGGGGATTTTCTGAAGTTTTGCAGAAGGACTGCATGGGATAATACATCGCGGCGAGGTGAAGCGCGAAGCGACAAAGTGCTCTGGACCGCTTGAGATCCCGGAAAGCGGCGGGTCGGTTCATTAAAGCACTTTTGGGTTTCGCGCACTCGGGACTCTCGCGCGTCCGTCGTTTCCAGCGCGTCGGTTCGGGACGGCGTCGACGTCTCTCGTGTGTGGATTTTAAAAGAAACCAAAGCGGAGGATGGAGGAGCAGAGTCATCTGATGCAGACCCTGGGCGGAGTGACCCTCGCCGGACACCCGGTGGCTTTACCGGTGCCTCACGACGGAAGCGACGCCAGAAACAAGCAGGACATCGGAGACATCCTGCATCAGATCATGACCATCACCGACCAGAGCCTGGACGAGGCTCAGGCAAAAAAGCACGGGCTGAACTGTCACAGAATGAAGCCGGCTCTGTTCAGCGTGCTCTGTGAAATCAAAGAGAAAACAGGTCTCAGTATCCGAGGCAGTCAAGATGAAGATCCTCCAGATCCTCAGCTCATGCGTCTGGATAACATGCTGCTGGCAGAGGGCGTGTCTGGACCGGAAAAAGGGGGCGGGGCAGCGGCGGTTGCTGCGGCAACAGCAGCAGTGGGCGTGGGAGCTGATAACTCCATCGAGCACTCGGACTACAGAGCCAAACTCAGCCAGATCAGACAGATCTACCACACCGAGCTGGAGAAATACGAGCAGGCGTGCAATGAGTTCACTACACACGTGATGAACCTGCTGAGAGAACAGTCTCGGACCCGACCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAACATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAGCAGAGCACCTGCGAGGCCGTCATGATCCTCAGGTCCCGCTTCCTCGACGCCAGGAGGAAAAGACGTAACTTCAGCAAGCAGGCGACGGAGATCCTCAACGAGTATTTCTACTCTCACCTCAGTAACCCGTATCCCAGCGAGGAGGCCAAAGAGGAGCTGGCCAAGAAGTGCGCCATCACCGTGTCGCAGGTTTCGAACTGGTTCGGTAATAAACGTATCCGCTATAAGAAGAACATCGGTAAATTCCAGGAAGAAGCCAATCTGTACGCAGCGAAGACGGCGGTGACGGCAGCTCAGGCCGTGGCGGCTGCTGTACAGAACAGCCAAAACAACTCGCCCGCAACGCCCAGCTCGGGCTTTCAGATGAAAGATGAAGACTTTCAGTTGGATGCGgcagaagacaaaaataatcTGTTAAACAACATGTTCACTGGTTCTTCAGGTTCGTATAGTTTGCCGGGTTCGGGAGACATGTTTATGAGCATGTCCGGCCTGAACGGATCCTACCAGCCGGCCTCGGTCCCCAACACAGGACAGACACAGGGAGACTCCATACGTCACACCATCGGTCAGTCGTTGGGTTACAGCGACGGCCTGCGGGGAAACCCGCTGTACAGCCCGCACGGACTGAACGGTAACGGCGGCTGGCACGACGCTGTCACTCCGTCTTCTGTGACGTCTCCTATAGAGGGAGCAAACAGCGTTCACTCGGACACCTCTAACTGAACCTTAACTGACCCCGACGATATCTCAGACGAGAACTCAGAGAGACGAGCGAGACTCAGAACCGCTCACTTCGACCAAAAACAGCACCACGTTGCAAAAATCAGCCGAGAGGATTGACGGTACCAGCTTTCTTTCCAAAACTGGCGATACCTCGGTGTCCAACATGTACGATTGTGGAAACATGGGACgctttttttgtcataatctcTGTGAACACCTTGGAacaggttttaaaatatatcacgATTTAAATTTGCTCGTAACTCTTGTCTTTTCGCGCAGTGCAGTATGTTCATTCTTAAAGACGGTTTTTCTCGTGCACatcgatttttttaaattgtatttttaacaacGTCGCCCCTCGTAAATATCGCCGGCCTTTTGGTTTCATTGAGACTCGGGCGTGATTCAGATTGATATGCAGATTCCAGAAGTAAAACGCCATCGATAATGTACAAAGAAATTGATTTTTGGCAATAATGTACCAACTGTTGAGGAACGTATAGCGTATGAAGTGGTTTTATATGCTTCCGCGGAGccgaatattttttttaaggtcaaGATTGGCTTAGAAACTCAATGTTTGCTGGAGGAATCGCACGGAAAGGTTACTTCTGAGACCGTTTGTTCATCTATTGCAGTGACAGATACTTACATAGCTTAtcgaattattttaatacatctcCTACCGTCAACAGGACGATAATGCAGATCGGACATAATAGACATAATCGGCGTGCATACTGTATCTGtacataaaaaaagcttttttgaatGTTATTCTTTTCTTACTCGATACATGTTCACTGATTATTACTTGGCTTCGGTTTTTACGTTCACGGGATCATCTGGGTAGTTTATGATTTGCAGTGAGAggttgtaatatttaaaaagtcttcTAACGTATTAACAGAATTTACACCGAGCAACTCTACGGAGAATAATTCATGTAATGTTATTAGTTTTTGATAAAGGAAATACTTGTGTTTCTGGCccacccccccccaaaaaaagtgtttgaataAACATCTGTAATTCTTAGCGGCTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60812 lncRNA downstream 1421 31977714 ~ 31978466 (-) True G41065
TU60811 lncRNA downstream 2836 31975936 ~ 31977051 (-) True G41064
TU60785 lncRNA downstream 75100 31723742 ~ 31904787 (-) True G41047
TU60963 lncRNA upstream 369662 32386127 ~ 32386472 (-) True G41177
TU60989 lncRNA upstream 422154 32438619 ~ 32439145 (-) True G41198
TU60982 lncRNA upstream 427817 32444282 ~ 32445281 (-) True G41191
TU61018 lncRNA upstream 460797 32477262 ~ 32477840 (-) True G41216
TU61019 lncRNA upstream 463890 32480355 ~ 32480713 (-) True G41217
XM_043239754.1 mRNA downstream 19039 31943855 ~ 31960848 (-) True mvb12ba
XM_043239755.1 mRNA downstream 19041 31943855 ~ 31960846 (-) False mvb12ba
XM_043239756.1 mRNA downstream 23727 31943855 ~ 31956160 (-) False mvb12ba
XM_043239757.1 mRNA downstream 45414 31895803 ~ 31934473 (-) True lmx1ba
XM_043238392.1 mRNA downstream 114997 31859896 ~ 31864890 (-) True zbtb43
XM_043238182.1 mRNA upstream 33187 32049652 ~ 32067214 (-) False ajm1
XM_043238183.1 mRNA upstream 33187 32049652 ~ 32067214 (-) True ajm1
XM_043238184.1 mRNA upstream 33187 32049652 ~ 32063072 (-) False ajm1
XM_043239589.1 mRNA upstream 66095 32082560 ~ 32103786 (-) False rabl6a
XM_043239591.1 mRNA upstream 66095 32082560 ~ 32103786 (-) True rabl6a
TU60769 other downstream 256981 31721270 ~ 31722906 (-) True G41035
XR_006251005.1 other downstream 268150 31702453 ~ 31711737 (-) True apooa
TU60335 other downstream 1153529 30819515 ~ 30826358 (-) True G40752
TU60340 other downstream 1153529 30819515 ~ 30826358 (-) False G40752
TU60266 other downstream 1187168 30789633 ~ 30792719 (-) True G40713
XR_006251008.1 other upstream 105819 32122284 ~ 32173823 (-) False tnca
XR_006251085.1 other upstream 197811 32214276 ~ 32293782 (-) False LOC122346090
XR_006251086.1 other upstream 197827 32214292 ~ 32293782 (-) False LOC122346090
XR_006251087.1 other upstream 197828 32214293 ~ 32293782 (-) True LOC122346090
XR_006251089.1 other upstream 197830 32214295 ~ 32293782 (-) False LOC122346090

Expression Profile