RNA id: XM_043238323.1


Basic Information

Item Value
RNA id XM_043238323.1
length 3673
RNA type mRNA
GC content 0.49
exon number 9
gene id ttll11
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6763136 ~ 6792026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTGCTGCCGTGTGCCTCTAAGGCTTCCGTTAGCTGCGTTGCGTTGTCAACAGGACCAAAACACCAGCAGCTCACAGGACCTTTACTTCCAGACTGTCCGCTGGCCGTCAGCTGACACTTCACCCGTCCGCCTCCGTTATCTCTGCCGCGTCTCAGCGAACAGCGGGTGAACGCGAGGCACGCGATGTTTTCATTCGGAGAAACGACGTCCGTTTAAAAGCGCGAGAGCTGTCGGTGCACCTCACCGGCACTTTAAAACTGACCGAAACTGACAGGGGGAATGCGGTGATGCGTCCAGCCATGCCCTGCGCTCGTCTTCCTCACATTTATACCGCGATATGTGATGTTAGTTGAGTGTTGCTTTATAGAGAATGGGATGAACTAGGTACAGTTACATTCATATGCAGCTGGTGGTATTGTTGTAGATAGTTAAGAACATCTTTTGCCATTAAAAGCATTCCGTGCAGCTCTCGCGTCCCCTGTCCCGTTATATCACCGTCAAAAATACCCCGCACGCCGAAGTGATGCGTTATCTGTCAGTGCTAATAACGTTCAGATTGTGATCATGGAGTCGGCGCGTCTTCACGCTAGTTTGTCAGTCTCTATAGTTGGCTTTTACAGAtcgattttctgtttttgcgCTTTAGTTCGGACAGCAGGTGCCGGTGCTTGTTAGCACCTCATGCTAGTAGATTATCCTTAAACATTCGTCAAATCTAAATGAGATAACAAACAATCCGACCATTAGCTAACACTATGAGCGATCACTATGAGAGGGTGAAGATCGAACTCCAGCAGATGAAGGAGGTGGAGAACGAGGCCGCGGCCGACGAGGAGCAGCTGTCCCCGGCCTCGGTCTCGCCAGTCCCCGCTGACCTTTCCTTCACTGCTCGGAGAGACCCGTCCAAAAGTAGCATCAACGGGAGAAGTCGGAGTAAAAGTAGGAGCAAAGCGGACGCGCACGAGAGACAGGTGAACGGTAAGCAACCGACGGATCCGGCGCCGCAAGGACAGAGGCGTGTAAGCAACGAGCCGAACCTTCACGTTAAAGGTACGGCGAGGCTTTTAAAGGTTAAAACGGCGGCAAACGGTCACGTCGAGTCAGgcaagagacagacagatgggaAGTGTGAGCATCACGGCAAAGAGGACGAGAGCAAAGCGGCcaaaaagagaaaagctgtGACGGTGGACACCTCCAAGGCAAAGACGTCTCTGGAGGCGCTGAAGATGAGCATCAGGCAGCTGAAGTGGAAAGAGTTTCCGATGGGTAGGCGGACAGCCTGTGATATCTACTGGCATGGCGTCTCTTTTCACGACAACGAGAACATCAACTCTGGGCAAGTCAACAAATTCCCAGGAATGATAGAGATGCTGCGGAAGATAAACCTGAGTCGTGCGGTGCGTACCATGCAGGAGCTGTTCCCGGAGGAGTACAACTTCTACCCACGTTCCTGGATACTGCCTGAGGAATTCCAACTCTTTTCCACACAGattcgtCTTCTGAAAGATAATGATTCAACCCTTAAACCCACTTTTATCGTCAAACCGGACAGCGGATCCCAGGGCGATGGCATCTACCTCATCCGTGACCCTGCTGACCTTCGGGTCATCTCAGGTTCTCAGATCAAACAAGCAGTTGTTCAAGAATACATCCAGAAACCCCTGCTCATCGATAAATTGAAGTTTGATATCCGCCTGTACGTTCTGGTCCGCTCGTTGGAGCCTCTAGAAATCTACATCGCTAAAGAGGGTCTTTCCAGGTTCTGCACAGAACCCTACCAAGAACCCAGCCAGAAGAACCTTAGTCATGTTTTTATGCACCTCACCAACTATTCCCTTAATGTGCACAGCGGGAACTTTGTTCACTCCGACAGCTGCAGCACGGGCAGTAAACGCACGTTCTCTAGCGTTCTCTATCGCCTGGCATCTAAAGGAGTGGACATCAAGAAGGTCTGGTCAGACATTATCGCTTTGGTTATCAAGACAGTAATTGCACTCGTGCCTGAACTAAAGGTGTATTATCAGGCAGATATACCACCTGGAAAACCAGGGCCGACATGTTTTCAGATCCTGGGCTTTGATATCCTGCTGATGAAAAACTTGAAGCCTGTTTTATTAGAGGTCAATGCCAATCCCAGCATGAGGATTGAACATGAACAGGAGGTGTCACCTGGTGTGTTTGAATATGTCCCGAGTCCAGTAGATGAAGAGGTGAAGGTGGGTGTGATCAGAGACACGCTGCGGCTCATGGACCCGGCTCAGAGAAAACAACACGTAACGTCAAGTACAGGGGGCGGTTCACCAGAAGAAGCTATTGTTGtggaaacaggaagtgatgagAAAGAAGGCTTGGCAGATTCCCTTCCATCTTTGTGCTTAAAGCAAGTCTTCCCTAAATACACCAAGCAGTTTAATTACTTGCGGGTCGTGGAACGCATCGCTGGCATTTTCCTGCGCTTCCTCGGTGTCAAAGGAACCATGAGACTGGGTCCGACCAGCTTCCGCACCTTCATCAGGAACTGCAAGCTGAGTAACAGCAGCTTCTCGATGGCTTCAGCGGACATCCTGTACATCGACATCACGCGTCGCTGGGCTGGAATGCTCCCCGACTCCAGAGAGGCAGCACGCAGGTTCAAGGCTTTACCGCTGCGGGAGCAGGTGCTCTTGCTGCTGGAGATTTGTGAAGGGGCCCTCGAGGGCCAGAGCCACAGTGAGAAGCCACGGCCACACCGAACGCACGCAAACCCCGCCTCTTCTCAATCATCAGCGCCAACCACGTTCAGCTCGCCCGCAATGACGCGGCGACGCCATCGGCCGCTGCAACTCTCTGCTAAAGCAAACACAGAGAACTgacaatctcacacacacacacacacacacgtcttcTGAGGAACTTCCAGAGGGCCACGCAGTgtgcttttgaataaaaaacagaaGGCAGAATAATGAATCGAAATTAAATCATTCACCCCTAGCTCTGCGCGCAAGCTAAAGTTGAATTGTTTATACGCAGCTCAGATGAAGCTATTTCTTTCACCACACTACACAGACAAATGTAACAGGATATTTGTACACTGACACTAAATGTGTAGACGGCTCGGCTTGTGTCGCGTAGCTCTTTGCTTACCTTCAGGTAATGTTGGTAGGATTCGTGGGAATCGATCACTGCAGGGATAAATATCACGGGATTCAATGTTTCTTAAAGGGACGAGATGTTGTCGTAACACGACTTCAGAAAAAGCAGCTAATTTTCTCAAATGGCTACCTTCAACTGACTAGGCAGAACAACACGGTGGCCTTTTGTTAGTAAAAATGGTGTTAACACCAGGACATGGCACCAAGTGCACTCGAAGTTTACCAagttgtgtattatttataccaaaagagatttatttattgtttttcacttAACCGAGTCATTTGCCGTAGCTGCGACTTGTCCGAACCGCTcctgcatgtaaaaaaaaaaaaatgagaggaggaggaaaaaaagagtttgcTGTGGTTTAATGCAAGTGGACATCTCGCAAGATTAGCACATATTTACACAGATCATTTAACCCTCGTTTAATATCACATTGCAGCTGCAGGCATCGACATATAAAATTAGGCTTGACTGAGATGTACTTTTTATGGACATGTTGAATAAATATTgcacttaaaatatta

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49629 lncRNA downstream 150081 6611740 ~ 6613055 (-) True G33683
TU49627 lncRNA downstream 151644 6609449 ~ 6611492 (-) True G33681
TU49626 lncRNA downstream 151694 6609449 ~ 6611442 (-) False G33681
TU49624 lncRNA downstream 151694 6609481 ~ 6611442 (-) False G33681
TU49541 lncRNA downstream 584465 6178172 ~ 6178671 (-) True G33615
TU49760 lncRNA upstream 43933 6835959 ~ 6838588 (-) False G33768
TU49756 lncRNA upstream 48345 6840371 ~ 6858383 (-) True G33768
TU49800 lncRNA upstream 130820 6922846 ~ 6926789 (-) False usp20
TU49785 lncRNA upstream 157518 6949544 ~ 6952310 (-) True G33791
TU49791 lncRNA upstream 157518 6949544 ~ 6952310 (-) False G33791
XM_043238966.1 mRNA downstream 419521 6282774 ~ 6343615 (-) True lamc3
XM_043238967.1 mRNA downstream 481741 6265737 ~ 6281395 (-) True aif1l
XM_043239279.1 mRNA downstream 499834 6255418 ~ 6263302 (-) True gfm2
XM_043239699.1 mRNA downstream 519318 6232266 ~ 6243818 (-) True enc1
XM_043239784.1 mRNA downstream 663435 6096157 ~ 6099701 (-) False ankra2
XM_043238584.1 mRNA upstream 36089 6828115 ~ 6830827 (-) True LOC122344933
XM_043240070.1 mRNA upstream 43857 6835883 ~ 6839683 (-) False LOC122345679
XM_043240069.1 mRNA upstream 43857 6835883 ~ 6839683 (-) True LOC122345679
XM_043240071.1 mRNA upstream 48692 6840718 ~ 6842727 (-) True LOC122345680
XM_043238293.1 mRNA upstream 125839 6917865 ~ 6921619 (-) True ptges
unassigned_transcript_954 other downstream 806765 5956299 ~ 5956371 (-) True trnak-uuu_104
XR_006251120.1 other downstream 1331742 5431264 ~ 5431394 (-) True LOC122346225
TU48850 other downstream 2140078 4622490 ~ 4623058 (-) True G33175
TU48822 other downstream 2570055 4144927 ~ 4193081 (-) False LOC122346168
TU49743 other upstream 32145 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 131404 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 138846 6930872 ~ 6943203 (-) False usp20
XR_006251117.1 other upstream 329696 7121722 ~ 7121849 (-) True LOC122346221
XR_006251118.1 other upstream 330313 7122339 ~ 7122464 (-) True LOC122346223

Expression Profile