RNA id: XM_043238324.1


Basic Information

Item Value
RNA id XM_043238324.1
length 2314
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC122344761
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1893780 ~ 1898590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGACACCTGTGAATTAGCAACTATGAATGCCAGTAGGTTACGTGTTTTGCGGATGTAATTTGCCGTAGAAGTTAAATGCATAATCATGTCTGGGTCTCAAGGAGTCATTGCTTTGTGTGAAAATACCACAGAAGTGTTTCTGGATGTTTCTAAATTGCTCATTACATACGCGGACAATATCCTTAGaaacccAAATGAGGATAAATACAGATCAATCAGAATTGGAAATCCAACATTTTCAACCAAGCTCCTACCAGTCAAAGGAGCCATTGAATGTCTCTTTGAGATGGGATTTGAGGAGGCTGAAACCCACCTAGTGTTTCCTAAATCTGCATCTGTGGAGAGGCTGAGGCAGGTGCGGGAGTCAATTGCTGCTGAAAGGGACCAGAGACTTGGTACGAGTAAAGCCGCGTCCAACCAACAAAGTCATCCTCCACCACCAGCAGGGCCCTCTGCTTCTTCTTCCTCGGCCATCTCCACACCTGCACCTGCACCACCACCAGCTGCTCTGCCATTCActTTGAGCAGTGGGACATTTCAGAAGACTGTGCAGTCAAACTTCCAGCATGTGTTGATATACGAGAGCCCCGAGTTGCAGCAGAAGGCCCTGAGCTGCATACCTCATGAACTGCTCCGATCCAGAGCTAAAGAACGCTTGAAACAAGCCAAGGACGTGGAACCAGCTTGTAATCTAGATGAGGAGGACATGTTAGTTTTAGAGCTGTTGCAGTGGTTCAAAGGAGACTTCTTTACTTGGGTGGACAATCTGCCATGTAGCCGATGTGGAGGTCCGACCCAGCCTTCTGGACCCCTCTCCCCCTCAGATGATGACCTACGCTGGAATGCAGGCCGCGTGGAGAACCACTTCTGTCACACCTGCCAGCTCTCCACTAGATTCCCAAGGTACAATAACCCAGAGAAGCTTCTGGAGACCAGAAGAGGGCGTTGTGGGGAATGGGCCAACTGTTTCACTCTGCTCTGCCGAGCTTTATGCCTTGAGGCCAGATACATCTGGGATAGCACGGATCACGTGTGGACGGAGGTGTATTCTCAGTCGCAGTGTCGCTGGCTGCACTGTGACCCTTGTGAAAACGCGTGCGATAAACCCCTCCTGTATGAAATCGGCTGGGGGAAGAAACTCTCCTACATCCTGGCGTTCTCTAAGGACCAGGTTGTGGATGTGACATGGAGGTACTCCTGTAAACACCCAGAGGTCCTTTCCAGACGCACACACATTCAGGAGACGAGGCTGCTGCAGACGCTTAACGGCCTCAACGCTACGAGGCAGCAGGCTCTAGGAGCAGAGAGGAAGCAGCAGCTGTTGCAAAGACTGCTGGTGGAGCTGGTCGAGTTCATTTCTCCAAAGACTCCTACATCTGGAGAGCTGGGGGGTCGCATCTCAGGATCTCTGGCTTGGAGGGTGGCCCGAGGGGAGTCTGGGGCAAGTGACACTAAAGGGGAAGAACAGGAATGCGTCTTTATTCCTTCAGAATCTGAAAAGCAAAAGAAGTTGTTCCATATTTCTTATAATGTGACCAAAAACTGTTACTTCAGAGTGAGCAATGGCCAAGAGACTATCCCAGGATGGCAGAGAGGTGCTTGGAGGACAGAAAATATGTTCAGGAAAGAAGAGAATGACTGGCATATGGTGTATTTGGCACGAACGGAGGGTTCTTCCTTCGGTAGGATAAGCTGGAAAATGAACTTCGCTCCAGTAGGGATGAAGATAAAGTCCACTTCGGTCCGAGCCTTCAGCCAGACCTTCCATTCAGGCAGCGTGCGTTGGAGTTTACGCTCCGCCGAGACCACCATAGAGTTCCCCGGAGATGGTGAACTGCACTCCTCTTCAAGTCTGTCCGGAGGCAAAGAGCTGATTGTGGAGGCGGAGCTCTCAGGAGGAGAGGGTGAAGTGTCATGGCAACACGCTCAGCTCTTCAGACAGAGTATAAAAGACACAGagaaagttttatttgaaatcttgGTTGAAATGGAAGAGTCTTGATAAGAGATTAGCATGTTTACGTCTCTTGCAAGTACACATGTGAAACGCTGAGGAAATGTTTCAGCAAAAGTAAGTTTTTACTTTCCTTTTAGACGCAACCCTGCAATCAACGGTGTTGTTTTAAAGCCCGGCATCAAGTCTCATCTGCATGTCTTTTTACTGTATGCTATTTTTATCTGgctgttgtttcttttcttttttttgccagaaatacattttactgtaaattactCTGGCTAGCCGGCTGGAAAATTGAACTATTTTATTGTAACGTCTAAGTAATGTGATTTTTAGATATAACCAAAGTTGG

Function

GO:

id name namespace
GO:0006516 glycoprotein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity molecular_function

KEGG:

id description
K01456 E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48110 lncRNA downstream 705 1851228 ~ 1893075 (-) True G32656
TU48107 lncRNA downstream 11388 1848824 ~ 1882392 (-) True G32654
TU48023 lncRNA downstream 97223 1794504 ~ 1796557 (-) True G32596
TU48007 lncRNA downstream 126900 1766598 ~ 1766880 (-) True G32586
TU48004 lncRNA downstream 130132 1763275 ~ 1763648 (-) True G32583
TU48138 lncRNA upstream 67739 1966329 ~ 1966532 (-) True G32675
TU48147 lncRNA upstream 97686 1996276 ~ 1996736 (-) False G32681
TU48146 lncRNA upstream 97721 1996311 ~ 1996843 (-) True G32681
TU48148 lncRNA upstream 101295 1999885 ~ 2000457 (-) True G32682
TU48158 lncRNA upstream 118788 2017378 ~ 2030493 (-) True G32688
XM_043239640.1 mRNA downstream 108391 1780165 ~ 1785389 (-) True ube2l3b
XM_043240861.1 mRNA downstream 121988 1769436 ~ 1771792 (-) True sdf2l1
XM_043238199.1 mRNA downstream 148084 1733099 ~ 1745696 (-) True top3b
XM_043240215.1 mRNA downstream 161643 1721233 ~ 1732137 (-) True ppm1f
XM_043240297.1 mRNA downstream 175879 1696432 ~ 1717901 (-) True mapk1
XM_043238158.1 mRNA upstream 121506 2020096 ~ 2022922 (-) True LOC122344636
XM_043238500.1 mRNA upstream 154115 2052705 ~ 2058733 (-) True LOC122344882
XM_043240718.1 mRNA upstream 189195 2087785 ~ 2090156 (-) True LOC122346063
XM_043240213.1 mRNA upstream 191562 2090152 ~ 2099181 (-) True LOC122345768
XM_043240773.1 mRNA upstream 486561 2385151 ~ 2418053 (-) True LOC122346100
TU47988 other downstream 199806 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 539366 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 557593 1322296 ~ 1336187 (-) False castor1
XR_006251110.1 other downstream 557596 1312606 ~ 1336184 (-) False castor1
TU48139 other upstream 68047 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 68047 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 121518 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 597914 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 681958 2580548 ~ 2585426 (-) False snrnp27

Expression Profile