RNA id: XM_043238337.1


Basic Information

Item Value
RNA id XM_043238337.1
length 2845
RNA type mRNA
GC content 0.41
exon number 7
gene id mpdu1a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10953770 ~ 10957971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTTTCGCCAGCGGTAAAAACATTAGACTGCTTTGACTATCCAGAAACGCCCCTCTCAAACGGAAACATCATTGGCTTGCTTAGCTGTCAAACTAGAGACCGTTTTGCTGGAATTTGCAAAATGAGGCATGTTTTGACAGGACAGGTCATCAGTTCAGTTCAGAAAAGTTTTGCAGAAAAAAGACGACCACCCATTTAGGATGGCTAGTTAGTTTAACACCGCAAGTTCTTATTTATTGCTGTAAAGCAGTAAGGTTAATTGAGATTACTTTCCGTGATTAGGTTTGCGCGGGTGCGCGATAGGAAGACCGCTGACAGGAATACATGAACTATGGACACGTCTGATGAAGGGAGGATGCCCCGTTTGAAGGAATTTTTGCTAACTTTCTTCATGCCAGAAAAATGttatgacaatttttttgtttacttcaaCTTTATGCACGTTCCCTGTCTGAAGATTGTCTTAAGTAAGACTATGGGAATATTGATTTTGCTGGGAATTGTTATTGCTCCGCTCCCTCAGATCTGGAAAGTTCTTTGGTCTGGAAGTTCTAATGGACTGTGTGTGACCTCCGTTTTTCTAGAGCTGTTGGCCATCTCCACTCATGCTGCTTTCTGCTACATTCAAAAATTTCCCATCGGtgccTGGGGGGAGAGTTTGTTTGCACTGATCCAGATTGCTGTCCTATCTTTGCTTGTCCAGCACTACCAGGGGAAAACcataaaaggtttaaaaaagaGGTGTATTTTTCTTGCTCTGTACTGTGGCTTTATGTTCCTCTTGGCCTTACCTTTGACCCCTGCGTCAGTTGTTTGGACCCTGCATGAGTGGAATGTGCTGCTGGTTATTGCTGGCAGGTTTTTGCAAGCAAGAAGTAACTTCAGATGGGGACACACGGGGCAGCTGTCtgctctctctgttttcttgGTGTTTCTTGGTTCTCTGGGACGCACCTTCAGTTCCCTGCAGGACACAGGCCTTTCTCTCTCAACTCATTTGCATGTGGTGGCCTGCTGTTGCAGTGCGGTGATACTAGCACAGGTCCTGATGTACTGGAGTAAAAGCGTGAAAGAAAGGCAAGTGGAGAAAGACAAGGCTGAATGAAAGACGTAAGATAAACTCTGTATGGTGGACTATTGATGTTCACTCAATGTGAACGCTTGTAAACGTAATTTCGTCAGATAAATGGTCTGTGAATTCTTTCCAGATCAATTTAATTCACTTCACCTACAAACCATCTTGcacgttttgtttttaaattagctCATGGGAACATGGTTTCATTTCATACCGAAAATGTATGTATTGTGAAGTCTTAATGTTTGGCTAGAATGTGGCAATTTTTGCTTTGGTAAATTCGGTATAAATaggatgcatttattatttcGTTTAAACATGCCCGAAAGTAAATAACAAGGTTAATTCACAAGTCAGCCTCTGTGTGGCAGTAGTCTTTTTATATAGCTGGTGGTTATTGCAATAAagcaccagtaggtggcagaaGAGTAGTCTTTTTAATATTCCTGAGTTTCTACTGTTCATGCAGTCTTTATTACTATATCACTGTAAATACATGTTGTTCACaatttttctatctttctctccGTCACCTGTTCGGATATCTTTCGACTCGCTTATATTTACACCTCTGCGGTCGTCAGTCATCAAATGTGTCATGTAGTTCTGAACTGTGGTTTCTTTCTTCccaaacattgtttattttttttcccagatgtctttttctgtaataaaatatatttctgatctTTTAAAGCATGCCGCTGCTCCCTTTTAcaccctttttttttacttatgctGAGTGAAAGTGTCTTGGGGATTAGCAGCGAAGTCAACAAGTAGTTTAAAGGTATTGAAATGACAGGCAGCCTGTCCTCTGTGTTTCGTTGACGCTGTGGCGTGGTTTGTTTGTTGGGTCTGGTTGTGTAGTCTTGGCTCTGTCTGCTTTGTGGGAGGTCTTCTCTGCAGGgccccgtgtgtttctggagcaGTGAAAACTCGCCGAAACACGAGTCACAAAGCGCGTGTGCATGCGTGTGGTTCGCTCCTTATCTACCTGTCTGACAGATCTCAATCCACCATCATAATGATCTAATCTGCGTGTCTGTGTGGAAACACCACACTGTGCGTGTGTCTGTTCGGCCCTGCCCACGAGGGGCTGAAATGAATAGTGTGTGAGGACTTGAAAGAATTATGTCGGAAAACAAAGCGATTTACTTATATATTCCATACTTACGACTTGTTCTGATCTGAACCCGCGTGTCCTGTATTATCGGAGCACtttgatgtgtgtttgtttggttgtGTGTGATAAGCGGCCCATTGATGCAGTTCTTCTGTACATCTGAAGAATGTGGTCTTGGTGTTTGGTGAGTATTTCTATCTGTGTGGGCCGCACAGATCCGACTGCAGATAGTCATTCACGGTGTTCTGAGATTTGAACAAACATGAACAAATCAAAATTCTGAATGAATGCAGATGAAGCAGACCTCGTTTGGATGGGGGGTTTTGTCAGGAACTTTTATCTGCCAGGAAttgattttgttattattattattatttcatgttttttatataataagcagattttagatatattttctgtgtgaatgtgaagTTTGCATTAAAAACTGGAAACGGCCGCATATCTTTAGCATTCGTTTTTTGCAGCATTTCATGCGCTTTTCATTGACGTGCTTATTGTTTTACCATTGTTCTAGACCCAGACTGTcagttttgaaatataaaaatcactgtaaaatatgattacattttaaatctattttgcaATGAACAAATTacgtacataaaaaaaataaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52130 lncRNA downstream 14284 10938695 ~ 10939486 (-) True G35388
TU52118 lncRNA downstream 20025 10932350 ~ 10933745 (-) True G35385
XR_006251094.1 lncRNA downstream 67032 10875648 ~ 10886738 (-) True LOC122346117
TU51839 lncRNA downstream 115473 10838005 ~ 10838297 (-) True G35203
TU51837 lncRNA downstream 120175 10832858 ~ 10833595 (-) True G35201
TU52135 lncRNA upstream 2340 10960311 ~ 10963602 (-) True slc25a15b
TU52137 lncRNA upstream 2340 10960311 ~ 10963602 (-) False slc25a15b
TU52162 lncRNA upstream 80719 11038690 ~ 11039232 (-) True G35410
TU52175 lncRNA upstream 102967 11060938 ~ 11062888 (-) True G35422
TU52176 lncRNA upstream 104929 11062900 ~ 11064447 (-) True G35423
XM_043239137.1 mRNA downstream 35277 10908898 ~ 10918493 (-) True atp6v1aa
XM_043239136.1 mRNA downstream 35369 10908898 ~ 10918401 (-) False atp6v1aa
XM_043240653.1 mRNA downstream 53496 10894152 ~ 10900274 (-) True zdhhc23a
XM_043238365.1 mRNA downstream 60176 10890842 ~ 10893594 (-) False LOC122344793
XM_043238364.1 mRNA downstream 60176 10890842 ~ 10893594 (-) True LOC122344793
XM_043239666.1 mRNA upstream 5630 10963601 ~ 10969118 (-) False slc25a15b
XM_043239661.1 mRNA upstream 15242 10973213 ~ 10979926 (-) False si:ch211-114c12.2
XM_043239660.1 mRNA upstream 15242 10973213 ~ 10979926 (-) True si:ch211-114c12.2
XM_043239662.1 mRNA upstream 15242 10973213 ~ 10979920 (-) False si:ch211-114c12.2
XM_043239663.1 mRNA upstream 15242 10973213 ~ 10979917 (-) False si:ch211-114c12.2
TU52116 other downstream 27607 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 79706 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 492061 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 618428 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1551147 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 461984 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 505860 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 625809 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 843343 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 1207439 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile