RNA id: XM_043238349.1


Basic Information

Item Value
RNA id XM_043238349.1
length 2909
RNA type mRNA
GC content 0.43
exon number 19
gene id rxfp2l
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13118367 ~ 13150538 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCAGCCTAGGAGATACGCACTCACTTGTATCTCAGAGCACCACGCATCATgcttcctcctctcctcctttcttctctctccttttccCTTGCTTTTCTTTCAGaTTCTTCAGGTTCTGATATGTGTCCGTTGGGTCAGTTTCCGTGTGGGAATCTGTCAGTGTGTTTGCCTCAACCACAGCACTGTAATGGGCACCAGGACTGTCCTAACGGAGCAGATGAAGAGAACTGCGtggaTAACAGTGGTTGGCCCCATCTATTTGATGCCTTCATGAAAACAAGGGTCCAGGAGTCAAAAGAGTGCAtGTTAGATGTCTATCCAGATGTGTGTCATTGTGAGGGACGGAAAGTGAATTGTAATGGCAAAAACCTCCTTCATGTACCTGTTGTATCATCTAATGTAACTGCACTAGAGCTGAACAGTAACAGGATTGAATCTCTCTCTCGTGATCTGTTCATCCGCTACAGACACCTGGAGAGACTacaTCTGGAAAGTAACAGTATAGAAATGATCTCCAAGAGGGCATTTTCAGGACTGATCTCTTTGCGTAAACTttttttgaGTCAGAACAGAATTGCATCTCTGAAAGCAGGAATATTTAGTGACCTCAGCAGTCTGGAGTGGCTGATTCTGGATGAAAACAGAATATCATCCCTGCGTCAGAAGTCTTTTGAAGGCctgaaatcattatttttcCTGTCTTTATTAAATAACTCTGTTGAACAATTTCCTAAAACATCGATTTGCCTTGAGATGCGTCTCAACTGGCTGGAAATGGAGGGGAATAGAATTTCATCTCTCTGGGCGTCTAGTTTTAAGAACTGCTCCTCTCTTACTGTCTTAGCATTGAGGAGAAATCGTATCAGCACCATTGAGGAGGGAACATTTGCAGACATGCAAAGATTGATAGACCTAGACGTGTCCATGAACCAGATCAAAGACCTGCCTCCATCTCTGTTTCAGAACCTCCAGAACCTCAAACAGCTaaaTATTTCCAACAATCCCCTGACAAACATATACGACGATCAATTTGACAGTCTGGTCAATCTGCAGTCACTGAGTATGGAAGAGGTAGAGATTCCCAACATCAGCATCAGGATGTTCCGACCTCTAACTAACCTCACTCACATttattttaagcGTTTTGAATTCTGTGGATATTCTCCCAACGTGCGGAGCTGCAAACCAAACACAGACGGAATCTCATCCTTCGAGAATCTGCTGGCAAACATAATTCTACGCGTGTTTGTCTGGGTCGTCGCCTTCATCATTTGCTTCGGAAACATCTTCGTCATCTGCCTGCGTTCCTGTATTGCTTCAGAGAATCAACATCACACGATGGCCATAAAATCCCTTTGCTGTGCAGACTGTCTCATGGGCGTGTATCTGCTTTTCATCGGCGCCTTTGACATCAAGTATTGTGGCGAGTACAACCGGCATGCTCAGATATGGATGGAGAGTATGTCTTGCCAGTTGATTGGCTCTCTGGCCATGCTATCCACAGAGGTATCCGTCATGATGTTGACCTATATGACACTAGAGAAGTACCTGTGCATCGTCTTCCCGTTCCAGCATTACCGCGCCGGGCGAAAACAGACCCTGTGCTCACTGACCTTCATCTGGTTGCTAGGATTTATCATTGCCGTTATTCCCTTCTGGGATAAACAGACATTCGGGAATTTTTATGGGCGAAACGGAGTATGCTTCCCTCTTCACTCAGACCAGACTGAGAAACCTGGTGCCAGATGCTATTCTACAGCTATTTTTCTCGgTCTGAATCTTCTGGCTTTCGTGATGATTGTATTCTCCTACTCCAGTATGTTCTACTCAGTCCAGAAGACAGCAAAGACAGCTCGTCAAACAATATATGACAGAGAAGTCACTATCGCAAAGAGGTTTTTCTTCATTGTGTTTACTGATGCCATGTGCTGGATTCCCATCTTCCTCCTAAAGATACTATCACTACTAAGAGTACAGATCGCTGGTACCCTCATTCTGTGGGTGGTGATTTTTATCCTTCCTATAAACAGCGCCCTGAACCCCATCCTGTACACTATCACAACCAGCGCCTTTCAGCAGAGACTCAAACAGTGTTTAAAATATCGCTGCCAGCAGACTaactgacacacacatacacacactatgCACATGCTCTGAGATTTATATTCCACGCGGAATAAAAGGTTGAAAGACGACAGGATAACGACCACACTCGCAAGATGCTCTCATCCTTAGCACAAGCCGGTAAGGCGTATAAGAGTAACGAGAGCACACACGGCAACATTAACCAGCGGACCATCATAAACAATATACGcttatgcaattaaaatgtaaaaccaagccttatattaaaaacaaataaacgagATACATGCAAATCAAAGACACTTCAACTGCCATATAGACCTAGAGCGTGTACATGCAGGGTAAGCCAAACTCTGTGGCTGTCAGAGAAAGCATAGAGGAAACGGGTTCGGAAGGGAGCCCGGTGGGCTGAGGATTGGAACCCTTCCGACTGATTTAATTGCGTTTTTGTGTTCTTGTGCGGATGTGTATGGAAAACAAAGGGCCAGTTGCATACAGTCAGGAGAGAAATGACCAAAAACTGAATGGCGGAGAGGAagatacacaaaaaaagatttcacaTTAAAACCAATCGCAGCACTTCATtcgtgaacaaaaaaaaatacaaagaaatacagTTCATTACGGTGTTCATGTTGGCATCACAGTACTAATTTGTTCCAGATTGCTGTTATTAAGATTACATGAAGTTATTGTATGAGTCTATTATTTATGGAACTCACGGCTTTCGTTTGTCTGCTGTAATTTGTCAGTTGTCtacaatatgtaaaatgaatgtaacATCCAAATAATtgcaatgaataaattataattatttcatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53144 lncRNA downstream 9419 13108699 ~ 13108948 (-) True G36063
TU53126 lncRNA downstream 61662 13055569 ~ 13056705 (-) True G36048
TU53124 lncRNA downstream 63510 13054133 ~ 13054857 (-) False G36047
TU53076 lncRNA downstream 184588 12933471 ~ 12933779 (-) True G36012
TU53073 lncRNA downstream 191905 12924743 ~ 12926462 (-) True G36009
TU53200 lncRNA upstream 166697 13317235 ~ 13317462 (-) True G36104
TU53204 lncRNA upstream 172393 13322931 ~ 13323222 (-) True G36108
TU53349 lncRNA upstream 219672 13370210 ~ 13373755 (-) True G36200
TU53365 lncRNA upstream 229761 13380299 ~ 13438104 (-) True G36213
TU53392 lncRNA upstream 262106 13412644 ~ 13414387 (-) True G36230
XM_043239671.1 mRNA downstream 67589 13020346 ~ 13050778 (-) False ophn1
XM_043239669.1 mRNA downstream 67589 13020346 ~ 13050778 (-) True ophn1
XM_043239670.1 mRNA downstream 67589 13030144 ~ 13050778 (-) False ophn1
XM_043240166.1 mRNA downstream 163522 12943325 ~ 12954845 (-) True eda2r
XM_043239055.1 mRNA downstream 206604 12894584 ~ 12911763 (-) False ttc33
XM_043239540.1 mRNA upstream 119864 13270402 ~ 13303696 (-) True efnb1
XM_043240077.1 mRNA upstream 237474 13388012 ~ 13391957 (-) False zgc:158432
XM_043240076.1 mRNA upstream 237474 13388012 ~ 13391957 (-) True zgc:158432
XM_043239924.1 mRNA upstream 242118 13392656 ~ 13407947 (-) False taf1
XM_043239921.1 mRNA upstream 242118 13392656 ~ 13407947 (-) False taf1
TU53125 other downstream 63510 13053844 ~ 13054857 (-) True G36047
TU52956 other downstream 612409 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 798682 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 949040 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 1302557 11801314 ~ 11815810 (-) False msna
unassigned_transcript_955 other upstream 225091 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 428523 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 508539 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 509436 13659974 ~ 13699226 (-) False lrch2
TU53475 other upstream 566586 13717124 ~ 13718543 (-) True G36298

Expression Profile