RNA id: XM_043238352.1


Basic Information

Item Value
RNA id XM_043238352.1
length 4891
RNA type mRNA
GC content 0.44
exon number 19
gene id LOC122344783
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20348875 ~ 20364126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAGCAGAAACCGAGGAGAGAAAGTCGAACTCCAGAACCTAAAGAGAAAGATCGACAGCACCTTAGCAGAAAAGTTTGCAGGGTGGCAAACAAAGAAGGTGCAGTTAAGTTGGCTGTAAGAAAAAACACTGTAAGCTGTTTTTCACCCATCGCCGGCTACCAAAGATCTGATCTCCGAGCAGAGCATTCTACGTACATATCCGCCTGGAGGAAAGCCCAAGGGCTTGTGAAACTAATTTTGAACTCACCTTGCAGTGCTGTTTCAGAGGCTGAAAGAGTCAGCATTAAGGATCAGAAAGACCGGTCAAACACGAAGGCTTCTGAACAATTGGCTGTTTTGAACGCTCAGACAATCGGAAACCTTAGTTCAAACCAAATGAAAAAGCACGAGAATTCATTTAAGAAGCATCCCAGCCCCTTGAGATGTCAGGCTCGAGTGTTGTATTCTCCAGCATCTGGAAAGGCATTCAAAAGCCGTGCAGGTTCTTCATGCCCCGTCAGAGCAGTTCCAATGGCACACAGAAATCATTACTCGCACAATTCCACCTCAGAAGTATTTGCTAAAAACGACAACTTTACAAAAACGACAAAACCACTAGTTGCAGGTAAAGAAAACGAAGGCCAAATGAAATCAAACAGGCAACCTAGACATAATATCCAAGGGCTGCAGGAATATATGCATCACCAGGCCGCTGAGAGAAGGAGAAAGGTGCTGCAAATGAGGGAAGAAGCACAGCGAGAGGAcgagaggaagcaaaggaataTGCATGAAGTAATTAAGAAACAAAGGCAAGTGCTCCACAGGGCCAAGAGAGAACAGCAACAGGAGTACAAGAACAGAGGCAGTCCCGAGGAGAAGGAGAGATGTGCTCATGTAGCTGACACAACTGAAGAACAATTGTCTGTCTTTCCTAGACAGAACCAAAGTGTGACAGTAGCCGAGCGGGTGGATCTGGGTGAAGCTGGCAGTCCTGTGAGTGCAGCTGAGGAAGAGTGGGCTCAACACGCTCTGGCaactcacagacacagagaggaGGCTCTCAGGAAGACCATCAGTGCTCTAGATACAAACATGGACGATGAAGAAGCCTGGCTGCGAATCACAGACCACAAAGGGTCTCTGAGACAGTCACAACCTGCTGGACAGGGCATCTGTGGAGCCAAAAGGGAAACTTTGTCTGAACGTGCGGCTCCGAATACAGACATAGAGACAAACCACAGACATGAAAGAGTgtcgattaaaaaaaagattaaagatgaaaaagatgGAGTGGATTGCAGAGCACAGATTGACCAGACAGAAAAAGGACAGGAAGAGCAAAGTGAGAGCAGTGACTCCACAAGCAAGCGGAGTGAGCTGAGCGAGTTGTACAGCCACCTCTCCCTGGCCCAGAGCCGGCGGGTCCTGAGGGAAGACGAGCTGAGGGCACGGCAGTACAGCGCACTCTTCAGGCTCAGGGAGAAAGCGCTCCGGGAGAAGACCCAAGCTGAGCTCGACTGGTTGGAGCACTGCAGAAATCGCGGAACTGCACAAGATGATATGCTTGCTTTCACGGAGCTCAAGCAGAAGCAGGAGGAAGTAATTCACAGATTCCAACGAGAGCAGgCAGAGATCCATTCCTGGCGAAACACGTACAGATCAGGCCAGCAGCAGAGACGGTTGCTTCTCCATCATCAGAGAGACATTCTTCATATCAAACAGTCAGCTGTTGGCTTAAGACAAGCTCTGCTAATACAGACTCTGCCAAAGAAAAATGGAATCACCAAGAAGGACAACACTTCCAGTTATTTGGAAGAAGAGGGTGTTATGCAGCCTGGGATTAAGCCAGATGCTAGGAGCACAGATAAAGCACCAAGAGAAGAAGGGAGCTTGTTGGGCAAGGTAGGTTTGAGGAGGCTGTTGTCATCAGATGAAGTGTGGACTTTGGGAAGGAAGAGGAACCAAGTGGAATTTGTCCCAGCAGAGCAGGATATTCTGCAAGTCGCAGAATCAAATAATCCTCCAGCCAGTCCTCTCACAGATACAGCCGACAGAACCAGGCTTCTCTTCACCTTATCAGTCCAGAAGGAATCAGCAAAACAAGATCCTCAGAAGAAGGCACAACCGCTTTATGAGGACACCAGCAAACTCCAGAGAGAAAGACCACAACATCCAGTTGAAGTGCCAATGAAGCCGGTGTTAAATATCCAGCATTTCACACTCAAATGTGAACCTCATTCAGATTCACTCAGAGCCCCAATAGTGTCCAGTTTGTCATCTGAAAAAAAGGATGATCTCGGACTGGACTCTAAGAAGAGCCATCTTAAACCCAAGGAGCAAGAagacataaagacaaaaaacgTGGTCCATGGCAGCACAACACCAGATACCACAGCTCTAAATGTACAGAACAATCAGAGACTGACGCTGAACAACAACCACAATATCTGTGACCAATATGCCGGGGTGCAATGGAAGTCATCTCTTTCATACCCCAAAACTGATAAAACCAATGAGTTTCCTGAACAAAAATCTCAGGCGTGTACAAATGAGACCATCACAGACAATCCACTTATTGAAAACTTAATTCTGGAAGCAGTAAGTGTGGAAATCAGAAAGGCTGAGGATAGTGCATCTTGTGATGTCAAAAAGTACACCGTGGTACCAGATGATTTGGACAATAAACAGGAAGGACACTGTATACCGCCGTGTTACGAAAGACAAGCGACCGTAGAGTCTACCCTGTCAGAAATTCTCTCTCCTGTAGATGAGGTTTTATCTTACGGAAGTGCAGAACTCCCTCCATCTGTTAAAGGTGGAGTGGCATCAGGTCTTGACAGCTATGGTTGTCCTACTCCTCCTCCTGCCTTTGAGATTATTACATGGACCAGTGAGGAGGAACTTCCAGCTCCACCTGATTCTGTAGAAGATTTCTCAATTAACAGCGAGAACTTCCCTCCTCTCCCTGTGGACTTCTCTCTGAAAAGAACAGAGTCTCAGAGTCTAGACTCTAACAGTCTGAGGGAAAAAGATGTAAACGATGATACTAATGGAGCTCTGTGTGAGGATGCAGAGGAAAACGACTGTTCGGAGTACACTAGCTCACTTCCTGAAGATGCAAGAAATGAAATCTCGGATCCATTGTCCTCCTTTCAAATTGGAGACAGAGTTCTTGTGTGTAACTCCAGACCGGGTGTGCTGAAATATAAAGGGCTCACAGCGTTTGCGAATGGGTTTTGGGCTGGTGTTGCTTTAGACGCCCCTAATGGAAACCACAATGGAACTTTTAGAGGTGTGAAGTATTTCAGCTGTGACAAAAGCCACTGTGTCCTGGTGAGAGCCGAGGACATTGCTCCCATACACAGAGAACATAGTAGTGATGTAGAGACTGGAGTGGATGAAGATCCTTTTTCAGATGAGGAGCAGCCTAGGGCAAAGAGAGATAAACAACAGAAGGATGGATTGTCGACAGATGGACAAAGACATAAACTTAGTCATTGTCCTCCAAGAGATTTGACCATAACTACAATCACCACATGCACACGGCAAAAGGAACCTCAGGAAGACATGTCAGATGGAGCAAGAAAACTTtcacatgcttttaaaatgcctttaccAAGAACAGACTTTGAGCTCCATCATAATGAGCTCCTTCAAAACAGACATCATGAGGATGCTAAGCTGACAGAAGAGCTGGATAAAGATGGAGTTCACTGTGCTCAGGATAATAGAAAGAGACAAAGGATTAAAGCATTGCATGACAATCACTCTACGGATACTGAGGTCAGAAAGGGTGAGGATGGCCATTTTATGCCATGTGTCTTGGATCAGTGGCATCAGGCCCAACCCGACACGCCACCAAAGATAAAAGTGCCGCCCCATGAAGACGGCATTGTGTACAGATTAGTGGACACAGCGGTGGAGATTCTGTGTGGTCAAGCAAATGAAGACACTCTCGACCTTTATGAAACACCAAGCTATTTATTTGACGATGATAGTCGCAAGCGTTATCGGCAGGTGATCTTTCAGTTAACATCCGATGTACTTCATGAGATCTTGGGCGATCTGCTAAGGACAAAACAGTCCGCCCAGAAGACAGATGATCGATCTGTGATCTCAGCTCTGCAATGCAGTCAAATTTCcatcacatttttaaagGCTGCCGTGAGAAAAGAGATACAGAAAATTCTGAATTTAGAGCGAGGCGAGCAACGGATGACAGAGATGCTCCAAAAACTGTGCAAATACTGGTACGCCAAGAGAGACAGAGTGGACTTTATACTGATTCAGGAACTTCATAACGAGGAGAGAAGTTGGCTAGACTACAGTGCTGACCAGTACACTGTGAAAATGCATCTGACTGAGgagattttcagttttcttttggATGACACAATATTAGCCCTAAATCATATGCACATTTCAACCTAAAAGTCAagtttcctttttgggtgaatctTGGGACAGATCCTGTCATGAGTATGTCAGAGTCACATTTCACTAATTATATTTTGCTTGAAGAACATAAACCCATAAAACCCATTTTTGGACCATTTAGTGCAGTTTTCTTGCATTATGAAATGTTCATAGCAACTAAACACATTTCCAATCTTTACCACTTTTGCaattacagtaatgaaaaaaaaattcattatggAAATTCTCAACATTTTagatattgtttacatttttgagtaTTTATATGTCataatattgtttgtattttaatatctgcTCACTTTAAATAGTGCATCACACTCATTTGTTTACTGTAATGGATttaaagtaacactttattaaagtaataagaATATGATGGAGAACAATgggaactgcaaaaaaaattatggatatattacataaatgagAATTTCAGGGCAAAATGTGCTTAATGGTTGTtaacaaacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56353 lncRNA downstream 62646 20284623 ~ 20286229 (-) True G38158
TU56349 lncRNA downstream 69774 20276668 ~ 20279101 (-) True G38156
TU56332 lncRNA downstream 188081 20155781 ~ 20160794 (-) True G38147
TU56164 lncRNA downstream 293077 20053350 ~ 20055798 (-) False G38058
TU56076 lncRNA downstream 392213 19956428 ~ 19956662 (-) True G38019
TU56326 lncRNA upstream 31511 20395637 ~ 20396293 (-) False LOC122345844
XR_006251041.1 lncRNA upstream 294968 20659094 ~ 20659471 (-) True LOC122345854
TU56393 lncRNA upstream 295781 20659907 ~ 20660855 (-) True G38171
TU56395 lncRNA upstream 298023 20662149 ~ 20662872 (-) True G38172
TU56396 lncRNA upstream 303398 20667524 ~ 20668474 (-) True G38173
XM_043238350.1 mRNA downstream 297 20326570 ~ 20348578 (-) True LOC122344781
XM_043240311.1 mRNA downstream 24310 20320918 ~ 20324565 (-) True LOC122345827
XM_043238343.1 mRNA downstream 41043 20304882 ~ 20307832 (-) True LOC122344776
XM_043240338.1 mRNA downstream 46259 20300494 ~ 20302616 (-) True LOC122345852
XM_043240335.1 mRNA downstream 48527 20299146 ~ 20300348 (-) True LOC122345847
XM_043240324.1 mRNA upstream 27560 20391686 ~ 20394553 (-) True LOC122345837
XM_043240331.1 mRNA upstream 30605 20394731 ~ 20396734 (-) True LOC122345844
XM_043240312.1 mRNA upstream 186844 20550970 ~ 20564321 (-) True LOC122345828
XM_043240336.1 mRNA upstream 313867 20677993 ~ 20679085 (-) True LOC122345848
XM_043240333.1 mRNA upstream 315414 20679540 ~ 20681669 (-) True edf1
TU56325 other downstream 221485 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 293077 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 413299 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 565024 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 1000112 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1248562 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1444887 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1514030 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile