RNA id: XM_043238353.1


Basic Information

Item Value
RNA id XM_043238353.1
length 2616
RNA type mRNA
GC content 0.45
exon number 18
gene id ncaph
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9227044 ~ 9232829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGTACGTGTGACATCATTGATGACGCGTGTAACCGTTCGGCGCTAATTTTCAAATGGTTGCCTGAACAGACGGCAAGAGAAAGTTTGGATcggttttattgtttaaaatcgTCCGATAATTACAGTTTCGTTATGAGCGCATTCAGTACCCCGACATCCCGGCCACGACAGTGGTCCTCGCCGGCAATAGGACACAAAGCCGCGCTGTCGGCCACTAGCACACCTCTGCTGGACAACATCAAGGGAAACGATGATGAACAGGAGAGACGTCAAAGACGCAGATCCAGGGTCATCGACCTTCACGGAGTGACTGACTCCTCCATCAACGAGGCCGGTAGCCACAGTACCGCAGGCACACCAGCTGCTGTCCCTAAGCTGTCATCCGCACAGATATCGGAGCATTACTCTACCTGTATCAAGCTTTCCACCGAAAATaaaATTACCACAAAGAATGCATTTGGCCTGCACCTCATTGATTACATGGCAGACATTCTCAAGCAGAAAGACTCCGAGCTCAACTTCAAGGTGGCAGCGGGGACCCTGGATGCCAGCACAAAAATATATGCGGTGAGGGTGGATGCGGTTCACGCTGATGCTTACAGAGTCTTGGGAGGCTTGGGATCTGAGACAAAACCAAAAGAGAGTCAGGATGGTGAGGAGGTGGATGAGGTAGCCGAGGGCGGTAAGGGGGAGCAGGTGGCTGCTAAACAGACTAAGAAAAGACCTCAGAAGAAGACAGTGGAGCAGAACCTCAGTAACATCAATCTCTCTGAATCCGAGATGAAGTGTGAGGTTGACCCCATGTTCCAGCGTATGGCCGCTTCCTTTGACGAGAACAGTACAGCGGGAGTGTTCCTCTCTGTGCTGTTCAGTGAAGACAGTCTCTGTGAGCTGCGTTTCCCTTCCCATATGACCTTGCTGAAGTCACAGTCATCTCCTGTGCAGGTGCCCCATCAGCATGTCCCGGTCTCGCCGTTTATAGgtCATTTAAAGACAGTAGAAGACAGACCAATTTGTCCATCTTTGGAAGATTTCTCCTTTACTAGATGGACTCCTGAACAAACCACAAACCTCAACCAGCTTCTTGAAAGGATGAAGCAGGGAGAGCACGCTTTTGATGTCAATGCGGACATTGAACCAGATGAGGATGTGGGTCAAGATTTTGGGGATAATTTTGATGCAGATGTAGATGTGGACGAGGGCGGACATGGAGACTGTGAGGAGTTTAAGGAACACCAAGAAGCTTGTTCAAAGAGCCCTCAGAAAGGACGAGGTGTTATTCCTATCGGTGACGTGGATATTGCCACCATGTGTCTGCAGTTGTCTGATCAGCCCAGAGAGTACTCGTACTTCAGTCCCAGGACCATGGCCACCTGGGTCGGACCTGGCTACTGGCTCTTCAAACCTGGACATAAACAGGATCACAAACCAGACAAAGAACCTCGGAAACGAGCACCAAAGAATCCTCTCGTAATTGACTTTAAGGGAGATATCAactttcataattattttcGGACAACTAAAGCAGCAACCACTATTAGCAAATCTGCTTTGAACACCAGCAACAAGAAAACCACACTTCCAGCAGATTTCCAGTATCCACCCAGTAACCTGTCACAGCTTAGTCTCAAGCCTTCCAACACACTCATTGCCGAAGGAAAGAAGAGATTATCGGGTGAGCTGGGTGAGGAAATAGGAGAGTATGACTACAACAACGCTAATGACACAGCCAACTTCTGTCCTGGTCTTCAGGAAGGGGACAGTGAGGATGCTGAAGGCTTTGGAGGATCTGATGACTCCCAAACAGACCGACCAACCCCTTTCTCTCTGGACACAGATGACATTTCTACATACGGAGAGGACTGTCTCGTCCCTGAGCCTCACAAAGTCAACATTATTGAGATAAACTATGCCAAGACAGCCAAAAAGATGGACATGAAGAAGCTAAAGACCACTATGTGGGGTCTTCTAACAGAGAGTCCTGAAAAACAAGCAAAGCAGGTGAACAGTGAGGAAACAGAAGTACCTGGAGAAAAATCATTCAGCCAGTCTGTCAGGAATCTTGTACAAAGGCTTCCCTCAGCCATGGCTACCAATCTCTCAGTACCATTGGCTTTTGTGGCCCTTCTGCACTTGGCTAATGAGAAAAACCTGGAGCTGCACAAGATTGACGGCATGACCGATATCATCATTAAACAAGGCCACTGAAAACCAAAACAGATCTTTATATAAGTCTTTAGTTGTagcaaaatgtaaatgcagcTTCTTATGTACTTTCTCATGTAAAATACCTATGTGCAGCTAAAACAGTATAGTCAAACGGAGGAACGTCAGgatcatgttaaaaatgttgtaCAGGAAACTACCACAGAAAAGTGAAACggctcaaaataaaaaaaaaaaaaacatgggttGCGGtccatgaataaaataattgctttttaagATTGAACTGttttgataactttttttttttcttcacagtaATAGCAAATGTGAAGTTACTGTTGTCAgtgtctgttttttaaaaaatgtttatttaaattgtaaaacttcattttatggcttggtttcttttctgtgtatgttttacatctacttttgaaaaataaa

Function

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0000796 condensin complex cellular_component

KEGG:

id description
K06676 BRRN1, BRN1, CAPH; condensin complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50983 lncRNA downstream 166230 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 235731 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 236021 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 292905 8933911 ~ 8934139 (-) True G34583
TU50966 lncRNA downstream 293964 8932860 ~ 8933080 (-) True G34582
TU51125 lncRNA upstream 14091 9246920 ~ 9248041 (-) True G34704
TU51339 lncRNA upstream 531244 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 533439 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 544804 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 1048580 10281409 ~ 10296141 (-) True G35035
XM_043240428.1 mRNA downstream 446 9222554 ~ 9226598 (-) True vamp8
XM_043240615.1 mRNA downstream 6516 9215498 ~ 9220528 (-) True vamp5
XM_043240765.1 mRNA downstream 12038 9185548 ~ 9215006 (-) True dnah10
XM_043240206.1 mRNA downstream 58985 9165895 ~ 9168059 (-) True LOC122345763
XM_043240491.1 mRNA downstream 61326 9137421 ~ 9165718 (-) True nsmfb
XM_043238162.1 mRNA upstream 15492 9248321 ~ 9275552 (-) False tacr1a
XM_043238161.1 mRNA upstream 15492 9248321 ~ 9275552 (-) True tacr1a
XM_043240184.1 mRNA upstream 83825 9316654 ~ 9319605 (-) False ogfod2
XM_043240181.1 mRNA upstream 83825 9316654 ~ 9319492 (-) False ogfod2
XM_043240182.1 mRNA upstream 83825 9316654 ~ 9319365 (-) False ogfod2
TU51091 other downstream 6537 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 296991 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 549326 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 795469 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 812238 8411882 ~ 8414806 (-) True G34372
TU51236 other upstream 104999 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1092286 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1228379 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1635535 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1691098 10923927 ~ 10926163 (-) True G35384

Expression Profile